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pycoMeth
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
GNU General Public License v3.0
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pycoMeth Nextflow pipeline
#52
MaestSi
closed
2 years ago
2
Missing submodule CpG_Aggregate
#51
DrownedMala
closed
2 years ago
2
Insufficient effect size / samples
#50
JWDebler
closed
2 years ago
3
pycoMeth.common.pycoMethError: Invalid input file type passed (nanopolish_fn). Expecting Nanopolish call_methylation output TSV file
#49
jolespin
closed
3 years ago
7
Comp_report exiting with invalid file input type from Interval_Aggregate
#48
dithiii
closed
3 years ago
1
Dev
#47
a-slide
closed
3 years ago
0
Dev
#46
a-slide
closed
3 years ago
0
upload error
#45
a-slide
closed
3 years ago
0
Dev
#44
a-slide
closed
3 years ago
0
No valid sites left after coverage filtering
#43
brookshenry3
closed
3 years ago
2
Use two-sided alternative in mannwhitneyu test
#42
snajder-r
closed
3 years ago
1
transcript id, gene id and transcript name in interval report
#41
Coracollar
closed
4 years ago
0
Invalid Input file type
#40
brookshenry3
closed
2 years ago
7
Add Volcano like plot
#39
a-slide
closed
2 years ago
0
Is it possible to use `Comp_Report` without a gff3 file?
#38
jolespin
closed
2 years ago
1
`ERROR: Not all the chromosomes found in the data file are present in the GFF3 file.` but this is incorrect
#37
jolespin
closed
4 years ago
3
ZeroDivisionError: float division by zero when running `Meth_Comp`
#36
jolespin
closed
3 years ago
3
Dev
#35
a-slide
closed
4 years ago
0
Dev
#34
a-slide
closed
4 years ago
0
Not recognising nanopolish file
#33
lab-rat-kid
closed
4 years ago
5
Dev
#32
a-slide
closed
4 years ago
0
[Question] For proper usage on differential methylation
#31
jolespin
closed
2 years ago
2
Dev
#30
a-slide
closed
4 years ago
0
Add support for Megalodon and DeepSignal
#29
a-slide
closed
2 years ago
4
What CpG modification is support in pycoMeth
#28
PanZiwei
closed
4 years ago
1
Dev
#27
a-slide
closed
4 years ago
0
Dev
#26
a-slide
closed
4 years ago
0
Dev
#25
a-slide
closed
4 years ago
0
Dev
#24
a-slide
closed
4 years ago
0
Improve differential methylation statistical test
#23
a-slide
closed
2 years ago
0
Improve methylation scoring method
#22
a-slide
closed
2 years ago
0
Dev
#21
a-slide
closed
4 years ago
0
division by zero in CGI_Finder
#20
BenjaminSchwessinger
closed
4 years ago
2
Documentation of output files
#19
BenjaminSchwessinger
closed
4 years ago
3
Write a dedicated Snakemake workflow
#18
a-slide
closed
4 years ago
2
Dev
#17
a-slide
closed
4 years ago
0
Option to generate a heatmap per individual for Interval comparison
#16
a-slide
closed
4 years ago
1
ValueError: Precision not allowed in integer format specifier
#15
hasindu2008
closed
4 years ago
13
Reduce memory footprint for large datasets
#14
a-slide
closed
2 years ago
3
Dev
#13
a-slide
closed
4 years ago
0
Update GH_token for travis deployment
#12
a-slide
closed
4 years ago
0
Dev
#11
a-slide
closed
4 years ago
0
Update doc
#10
a-slide
closed
4 years ago
0
Dev
#9
a-slide
closed
4 years ago
0
Dev
#8
a-slide
closed
4 years ago
0
Dev
#7
a-slide
closed
4 years ago
0
Dev
#6
a-slide
closed
4 years ago
0
Dev
#5
a-slide
closed
4 years ago
0
Dev
#4
a-slide
closed
4 years ago
0
Dev
#3
a-slide
closed
4 years ago
0
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