aCLImatise CliHelpParser issues

aCLImatise / CliHelpParser

Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)

https://aclimatise.github.io/CliHelpParser/

GNU General Public License v3.0

14 stars 5 forks source link

issues

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Spacy 3

#75 multimeric closed 3 years ago
0
Automatically store docker images produced by docker executor

#74 multimeric closed 3 years ago
0
Add janis converter

#73 illusional closed 3 years ago
15
Replace dataclasses with attrs throughout

#72 multimeric closed 3 years ago
0
Support optional types in CWL

#71 multimeric closed 3 years ago
0
Add array separator support

#70 multimeric opened 3 years ago
0
Fix #67, with test

#69 multimeric closed 3 years ago
0
Use the flag optional status correctly in CWL

#68 multimeric closed 3 years ago
0
Add `/` as a flag synonym delimiter

#67 multimeric closed 3 years ago
0
Add to biocontainers

#66 multimeric opened 4 years ago
0
Add man executor

#64 multimeric closed 3 years ago
0
Basecamp docs

#63 multimeric closed 4 years ago
0
Support Docker Images

#62 multimeric closed 3 years ago
0
Add to bio.tools

#61 multimeric closed 3 years ago
0
Add reference to BaseCamp in aCLImatise docs

#60 multimeric closed 4 years ago
0
Support `man` pages

#59 multimeric closed 3 years ago
1
Test tool wrappers using cwltool/miniWDL

#58 multimeric opened 4 years ago
0
Support docker images

#57 multimeric closed 3 years ago
0
Reanalyse

#56 multimeric closed 4 years ago
0
Trigger automation on publish

#55 multimeric closed 4 years ago
0
Fix the CWL IDs, use cwltool CLI to validate instead of the API

#54 multimeric closed 4 years ago
0
Pin dotnot action 1.6.0

#53 multimeric closed 4 years ago
0
Add test for valid descriptions

#52 multimeric closed 4 years ago
0
Check for an amount of valid dictionary words in the description

#51 multimeric closed 4 years ago
1
Rename acclimatise to aclimatise

#50 multimeric closed 4 years ago
0
Don't use flag name if it's 2 characters

#49 multimeric opened 4 years ago
1
Fix the CWL ids

#48 multimeric closed 4 years ago
1
Change the PyPI package, and module name to `aclimatise` instead of `acclimatise`

#47 multimeric closed 4 years ago
1
Add output generation for CWL and WDL

#46 multimeric closed 4 years ago
0
Provide detailed error objects

#45 multimeric opened 4 years ago
0
Parser rewrite

#44 multimeric closed 4 years ago
0
Support the PyPI readme

#43 multimeric closed 4 years ago
1
Avoid repeats

#42 multimeric closed 4 years ago
0
Avoid repeating subcommand testing

#41 multimeric closed 4 years ago
0
Certain containers never terminate

#39 multimeric closed 4 years ago
1
try to refine type

#38 bernt-matthias opened 4 years ago
5
Better logic for combining types from description, argument and names

#37 bernt-matthias opened 4 years ago
3
bedtools misdetections

#36 bernt-matthias closed 4 years ago
7
missing dependencies

#35 bernt-matthias opened 4 years ago
3
Add a hard timeout to DockerExecutor

#34 multimeric closed 4 years ago
0
Add an actual timeout to the docker executor

#33 multimeric closed 4 years ago
0
Fix no decode

#32 multimeric closed 4 years ago
0
'NoneType' object has no attribute 'decode'

#31 multimeric closed 4 years ago
0
Add executors, allowing docker execution etc

#30 multimeric closed 4 years ago
0
[WIP] Initial Galaxy support

#29 blankenberg opened 4 years ago
5
Fix for executables that have a file extension e.g. samtools.pl

#28 multimeric closed 4 years ago
0
Only parse usage if the word usage is at the start of a line

#27 multimeric closed 4 years ago
0
Remove cwlgen as dependency

#26 illusional closed 4 years ago
1
make None the fall back return value of infer_type

#25 bernt-matthias closed 4 years ago
3
emulate the behavior of subprocess.run(check=True)

#24 bernt-matthias closed 4 years ago
1