aametwally / MetaLonDA

METAgenomic LONgitudinal Differential Abundance method
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change `prefix` behaviour #9

Open sjanssen2 opened 5 years ago

sjanssen2 commented 5 years ago

This is addressing #8 My problem was that I misunderstood the meaning of the prefix parameter. Documentation says prefix for the output figure. Coming from gcc compilations, I gave an absolute path as the prefix. But I figure it is intended to be "just" a name. Hence, the double concatenation of prefix in e.g. https://github.com/aametwally/MetaLonDA/blob/2ad94285d2a4cc7ca6af749f3539db37b4f1d35e/R/Metalonda.R#L336 results in an impossible or at least non existent file path.

With this #PR, I'd like to suggest to slightly change the meaning of prefix into a file path.