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aaronwolen / pbs-acf

Snakemake profile for ACF@ORNL
MIT License
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Consistent job submission errors #1

Open aaronwolen opened 5 years ago

aaronwolen commented 5 years ago

Every submitted job produces the following messages in the error stream:

Can't locate local/lib.pm in @INC (you may need to install the local::lib module) (@INC contains: /opt/moab/lib/perl5 /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/site_perl/5.26.2/x86_64-linux-thread-multi /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/site_perl/5.26.2 /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/5.26.2/x86_64-linux-thread-multi /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/5.26.2 .).
BEGIN failed--compilation aborted.
bash: module: command not found
bash: module: command not found
bash: module: command not found
bash: module: command not found
Can't locate local/lib.pm in @INC (you may need to install the local::lib module) (@INC contains: /opt/moab/lib/perl5 /opt/moab/lib/perl5 /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/site_perl/5.26.2/x86_64-linux-thread-multi /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/site_perl/5.26.2 /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/5.26.2/x86_64-linux-thread-multi /lustre/haven/proj/<account>/conda/envs/liver-dnam/lib/5.26.2 .).
BEGIN failed--compilation aborted.
aaronwolen commented 5 years ago

I think the module command not found errors come from the module load statements in my .bashrc but doing the following had no effect: