issues
search
ababaian
/
LIONS
LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
GNU General Public License v3.0
27
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error when executing RNAseqMaster.sh
#29
MarcelloMalpighi
opened
1 year ago
0
Questions regarding preprocessing and environment configuration when using existing alignment results
#28
Lynuxoo
opened
1 year ago
0
Can I use existing alignment results from STAR as input for LIONS?
#27
Lynuxoo
closed
1 year ago
1
Post Calculate Exon/Repeat Interactions error: 0 regions loaded from file
#26
synanth
closed
1 year ago
2
Issue with East LIONS
#25
smiriyala3
opened
2 years ago
15
LIONS for stranded RNA-Seq data
#24
rpg18
opened
3 years ago
3
java.io.IOException
#23
WalterHK
closed
3 years ago
0
Could not find Bowtie2 index file presist
#22
WalterHK
closed
3 years ago
5
coverage threshold for TE
#21
whiteorchid
closed
3 years ago
1
Assign LICENSE
#20
ababaian
closed
3 years ago
0
memory usage and speed up consultant, thanks!
#19
whiteorchid
opened
3 years ago
2
Bioconda package
#18
stephanflemming
closed
4 years ago
1
Request for a small test dataset
#17
stephanflemming
opened
4 years ago
2
Any plans to switch to HISAT2?
#16
Alex-Nesta
closed
4 years ago
2
Fail to parse input.list
#15
Alex-Nesta
closed
4 years ago
5
chimericReadSearch.py: Error in Calculate Exon/Repeat Interactions
#14
ababaian
closed
4 years ago
48
parameter.ctrl not found
#13
Alex-Nesta
closed
5 years ago
2
Can't find bowtie 2 index files
#12
Alex-Nesta
closed
5 years ago
13
custom annotation library
#11
Alex-Nesta
closed
5 years ago
4
Not checking exonTree chromosomes
#10
benbfly
closed
4 years ago
2
yum install needs -y
#9
benbfly
closed
5 years ago
0
Manuscript Revisions Outline
#8
ababaian
closed
5 years ago
1
LIONS Output
#7
ababaian
closed
5 years ago
1
LIONS container update
#6
ababaian
closed
5 years ago
2
LIONS baseline comparisons
#5
ababaian
closed
5 years ago
1
incorrect syntax in Dockerfile?
#4
benbfly
closed
5 years ago
1
Example Data
#3
ababaian
closed
5 years ago
2
chimGroup.R Error in `$<-.data.frame`(`*tmp*`, "RMDB",
#2
qoldt
closed
4 years ago
9
lions problems
#1
b12loroc
closed
6 years ago
5