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abacus-gene / hhsd

HHSD is a python pipeline for hierarchical heuristic species delimitation using genomic sequence data under the multispecies coalescent model. It drives data analysis using the program bpp.
GNU General Public License v3.0
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Add confidence intervals to gdi estimates #4

Closed dkornai closed 4 months ago

dkornai commented 4 months ago

New version of the program now gives estimates of the 2.5% and 97.5% HPD on the gdi, not just the mean. Example output would be:

> Proposal results:

node 1  GDI 1  2.5% HPD  97.5% HPD node 2  GDI 2  2.5% HPD  97.5% HPD  merge accepted?
     A   0.04      0.01       0.13      B   0.03      0.01       0.11             True
     C   0.03      0.01       0.11      D   0.02      0.01       0.09             True

This can help users better interpret the results.