HHSD

`hhsd` can be used to perform Hierarchical Heuristic Species Delimitation from multilocus genetic data.

Users must have python 3.9+ installed. Check your current version with python --version.
- Linux

Installation on linux can be accomplshed via the following set of commands:
```
git clone https://github.com/abacus-gene/hhsd
```
```
cd hhsd
```
```
pip install .
```
- macOS

Installation on macOS is also relatively straightforward. Make sure that you are using the pip version specific to python3.
```
git clone https://github.com/abacus-gene/hhsd
```
```
cd hhsd
```
```
pip3 install .
```
- Windows

Windows installations are slightly more complicated.
If git is aldready installed, run the command: git clone https://github.com/abacus-gene/hhsd
If not, download the code by visiting https://github.com/abacus-gene/hhsd/archive/refs/heads/main.zip. Rename the zip file to hhsd.zip, and then uncompress.

Then, install the program as expected:

cd hhsd

pip install .

To check if hhsd was installed successfully, open your command line of choice, and type:

hhsd

This should result in a greeting message similar to the following:

hhsd version 0.9.9
12 cores available
specify control file for analysis with --cfile

Details on the operation of the program, including best practices, and a thorough explanation of parameter syntax can be found in the manual.