abishara athena_meta issues

abishara / athena_meta

read cloud assembler

MIT License

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issues

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ctgfasta_path option in config must reference a BWA index

#40 priscalim00 closed 3 weeks ago
1
can not OLC assemble

#39 juntaowang closed 3 months ago
0
AttributeError: 'NoneType' object has no attribute 'error'

#38 nick-youngblut opened 4 years ago
0
cryptic AssertionError

#37 nick-youngblut opened 4 years ago
0
force re-run of entire workflow

#36 nick-youngblut opened 4 years ago
1
Support gzip'ed read input?

#35 nick-youngblut opened 4 years ago
0
Hi, I want to know what 'integer sample identifier' means in the FASTQ formatting tips.

#34 dmsalsgh97 closed 3 years ago
4
Distinct Cluster Settings for OLC Flye Step

#33 T300M256 opened 4 years ago
0
[Errno 12] Cannot allocate memory

#32 ZhangZhenmiao closed 4 years ago
0
Error during assemble_olc : AssertionError: merge FASTA not valid

#31 senaj opened 4 years ago
3
flye-polish error

#30 ptdtan opened 5 years ago
0
Missing scaffolds.fasta

#29 davidvilanova opened 5 years ago
6
lower than expected barcodes

#28 davidvilanova closed 5 years ago
2
Error: Cannot allocate memory

#27 nkalsi22 opened 5 years ago
6
idba_subasm processes using 2 threads per process, overloading server

#26 cjfields opened 5 years ago
6
MEGAHIT instead of metaspades?

#25 cjfields closed 5 years ago
3
SLURM settings not used during flye olc

#24 swarris closed 5 years ago
1
Fix link to article

#23 jvhaarst closed 5 years ago
0
Error: assembly failed to produce contig.fa

#22 nkalsi22 closed 5 years ago
29
Flye error

#21 juansearch opened 5 years ago
3
Sample json

#20 juansearch closed 5 years ago
2
athena_meta install error

#19 tina-666 opened 5 years ago
2
How does athena calling other programmes ?

#18 Zhong17 opened 5 years ago
1
Where can I find example config.json file ? [EOM]

#17 bbsunchen closed 5 years ago
0
assembly failed to produce contig.fa

#16 nick-youngblut closed 5 years ago
4
error when opening file `./results/olc/pre-flye-input-contigs.fa`

#15 nick-youngblut closed 5 years ago
4
NOT in barcode sorted order

#14 nick-youngblut closed 5 years ago
7
Install with conda, not pip

#13 vinisalazar closed 5 years ago
8
seed_ctgs when continuing from aborted run

#12 bsiranosian closed 5 years ago
3
Installation Error

#11 aslomko closed 5 years ago
0
Athena Assembly olc error

#10 knguyenjcvi closed 5 years ago
15
pip install error

#9 vphan13 closed 6 years ago
2
Cannot open file "./results/olc/pre-flye-input-contigs.fa"

#8 jennifertheland closed 6 years ago
6
Log files are not closed properly

#7 1dayac closed 5 years ago
4
Example config.json file missing

#6 aleu785 closed 5 years ago
9
Input bam needs to be indexed

#5 mikolmogorov closed 5 years ago
1
Barcodes format

#4 mikolmogorov opened 7 years ago
2
Ns in input fasta

#3 mikolmogorov opened 7 years ago
0
input generation

#2 mbourgey closed 7 years ago
2
installation fail due to pysam old version

#1 mbourgey closed 7 years ago
2