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abuzarmahmood
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blech_clust
GNU General Public License v3.0
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Adding my changes to a test branch
#177
Mraymon5
closed
3 months ago
0
blech_run_QA error
#176
emmalala123
opened
3 months ago
11
Add Sample Data for testing/practice
#175
Mraymon5
closed
2 months ago
0
README updates, and a minor tweak to dig_in import behavior to expand compatibility with different naming conventions
#174
Mraymon5
closed
3 months ago
2
Update post process to have $DIR as a position argument (not kwarg) to be consistent with other scripts
#173
emmalala123
closed
2 months ago
1
Issue with no plots...non GUI backend in post-process
#172
emmalala123
closed
3 months ago
1
Make FAQ with deleting results.log for blech_run_process.py
#171
emmalala123
closed
1 month ago
4
ReadMe should have script usage instructions
#170
emmalala123
opened
4 months ago
0
Allow multiple units ouptut from splitting
#169
natashakbt
opened
4 months ago
0
Umap plot for split clusters
#168
natashakbt
opened
4 months ago
0
`blech_clust/utils/blech_process_utils.py` `check_classifier_data_exists` exits if classifier data is not found,
#167
abuzarmahmood
opened
4 months ago
0
params templates assume neurecommend is installed
#166
natashakbt
opened
4 months ago
0
If attempting to use neurecommend and it's not installed, raise error
#165
abuzarmahmood
opened
4 months ago
0
Error running blech_run_process
#164
natashakbt
closed
4 months ago
7
Fix seed for all GMMs
#163
abuzarmahmood
closed
2 months ago
1
Issue running blech_clust_run
#162
cmazzio
closed
4 months ago
2
Cannot write to --joblog error with blech_emg_jetstream_parallel.sh
#161
natashakbt
opened
4 months ago
4
Error with emg_filter.py: Hard coded file path? Commit e9a5857
#160
natashakbt
closed
4 months ago
3
Error running blech_make_arrays: index out of bounds
#159
natashakbt
closed
4 months ago
11
Syntax error running blech_clust_pre.sh
#158
natashakbt
closed
4 months ago
8
Shuffle test for units similarity
#157
abuzarmahmood
opened
5 months ago
0
Raw Recordings Removed progress bar
#156
cmazzio
closed
1 month ago
0
Change np.int to int
#155
hfgem
closed
2 months ago
0
Separate output paths for BSA and STFT
#154
abuzarmahmood
opened
7 months ago
0
148 separate emg outputs in hdf5 by dig in
#153
abuzarmahmood
closed
7 months ago
2
Merge ephys data into blech_clust
#152
abuzarmahmood
closed
1 month ago
0
Maximum inter-unit differentiation project as a plotted feature to detect drift
#151
abuzarmahmood
opened
7 months ago
0
Have waveform overlay plot where waveforms are colored by time (to better detect drift)
#150
abuzarmahmood
opened
7 months ago
0
User post-processing on autosorted data
#149
abuzarmahmood
opened
7 months ago
0
Separate EMG outputs in HDF5 by dig-in
#148
abuzarmahmood
closed
7 months ago
0
Add trial inds to all emg plots
#147
abuzarmahmood
opened
8 months ago
0
EMG plots with filtered signal overlayed with BSA gapes
#146
abuzarmahmood
opened
8 months ago
0
144 emg classifier
#145
abuzarmahmood
opened
8 months ago
4
Multi-mouth movement emg classification pipeline
#144
abuzarmahmood
opened
8 months ago
0
Functionality to suggest merging of clusters
#143
abuzarmahmood
closed
7 months ago
1
Functionality to automatically post-process if clustering was also automatic
#142
abuzarmahmood
closed
8 months ago
2
Automatic post-processing if auto-sort is on
#141
abuzarmahmood
closed
8 months ago
0
Add plot with dig-in order to QA_output dir
#140
abuzarmahmood
closed
8 months ago
0
119 overlay psth add heatmaps
#139
abuzarmahmood
closed
8 months ago
0
Hierarchical clustering plot to better assess cluster stability
#138
abuzarmahmood
closed
8 months ago
0
Assess cluster stability using a hierarchical clutering plot
#137
abuzarmahmood
closed
8 months ago
1
Have single array as output for spike-features in blech_process...
#136
abuzarmahmood
opened
9 months ago
0
Cluster stability metrics for individual clusters + entire channels
#135
abuzarmahmood
opened
9 months ago
2
umap plots for all waveforms + classifier approved waveforms
#134
abuzarmahmood
opened
9 months ago
0
Hardcoding of time and frequency in BSA processing and segmentation
#133
abuzarmahmood
opened
9 months ago
0
Additional EMG Freq analysis options
#132
abuzarmahmood
opened
9 months ago
1
Make "run_emg_processing" file to run full emg pipeline
#131
abuzarmahmood
opened
9 months ago
0
Provide STFT as an alternative option for BSA in EMG processing
#130
abuzarmahmood
closed
9 months ago
1
Multi scale features for clustering
#129
abuzarmahmood
closed
9 months ago
2
Add file to run QA steps
#128
abuzarmahmood
closed
10 months ago
0
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