Updated merge of old repos with tests added

[tacketar]

This is massive and unwieldy pull request. Getting this merged in should get us back to making more manageable pull requests. This has a litany of changes:

• All changes/bugfixes added pre-refactor have been incorporated.
• More name-mangling done to fit the naming scheme as I came across them. There is more to do
• All old tests have been added to the tests directory and all bugs discovered fixed. This is NOT integrated into the testing framework. That will be done at a later date
• A lot of routines were added to the public API that were used by the test programs. I don't think any new structures were exposed but several constructor/destructor/accessor functions were added to make objects usable outside of the core library.
• Several structs were moved out of the API. These just had a few references and could be easily converted to ptrs.
• Resolves issue #126 and #127

[PerilousApricot]

This PR doesn't merge against master, @tacketar

hudson.plugins.git.GitException: Command "git merge 0458da62853f97893c51ab10e338be91e4e76239" returned status code 1:
stdout: Auto-merging src/toolbox/tbx/network.h
Auto-merging src/toolbox/tbx/list.h
CONFLICT (content): Merge conflict in src/toolbox/tbx/list.h
Auto-merging src/lio/lio_fuse_core.c
CONFLICT (content): Merge conflict in src/lio/lio_fuse_core.c
Auto-merging src/lio/lio_core_io.c
CONFLICT (content): Merge conflict in src/lio/lio_core_io.c
Auto-merging src/lio/lio_config.c
Auto-merging src/lio/lio/lio.h
CONFLICT (content): Merge conflict in src/lio/lio/lio.h
Auto-merging src/lio/lio.h
CONFLICT (content): Merge conflict in src/lio/lio.h
Auto-merging README.md
Auto-merging CMakeLists.txt
Automatic merge failed; fix conflicts and then commit the result.