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acheng416 / Benchmark-CTCM-ST

Datasets for "Benchmarking cell-type clustering methods for spatially resolved transcriptomics data"
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Analysis code #1

Open YANG-ERA opened 1 year ago

YANG-ERA commented 1 year ago

Hi~ excellent work ！I am greatly impressed by the methodology and the results present in your work and would like to reproduce the analysis using your code in my research. I would be grateful if you could kindly provide me with the source code and the necessary instructions to run it on my computer. Thank you! Best, Yang

acheng416 commented 1 year ago

Hi Yang,

Thanks for expressing interest in our work! We are actively working on refactoring the code so that you and others can easily run the scripts. I appreciate your patience, and please be on the look out for the updated code in the near future.

Best, Andrew

bangtran365 commented 1 year ago

Can you please provide the real datasets too? They seem missing.

YANG-ERA commented 2 months ago

Hi Yang,

Thanks for expressing interest in our work! We are actively working on refactoring the code so that you and others can easily run the scripts. I appreciate your patience, and please be on the look out for the updated code in the near future.

Best, Andrew

Dear Andrew, I am particularly interested in the SRT data generation process using scDesign2 to simulate read counts for synthetic cells that mimic the characteristics of the SRT dataset. If possible, could you please provide me with some detailed sample code that demonstrates how to use scDesign2 to simulate SRT dataset? This would be incredibly helpful for my research and would allow me to get started with testing my analysis approaches on the synthetic data. I understand that you may be busy with the code refactoring efforts, but any assistance you can provide would be greatly appreciated. Thank you in advance for your help. I look forward to hearing from you.

Best regards, Yang