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aertslab / AUCell

AUCell: score single cells with gene regulatory networks
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could not find function "AUCell_run" #37

Open Jiayi-Zheng opened 1 year ago

Jiayi-Zheng commented 1 year ago

Hello, I was trying AUCell with R and:

> library(AUCell)
> cells_AUC <- AUCell_run(exprMatrix, geneSets, aucMaxRank=nrow(cells_rankings)*0.05)
Error in AUCell_run(exprMatrix, geneSets, aucMaxRank = nrow(cells_rankings) *  : 
  could not find function "AUCell_run"
> ls("package:AUCell")
 [1] "AUCell_buildRankings"     "AUCell_calcAUC"           "AUCell_createViewerApp"   "AUCell_exploreThresholds" "AUCell_plotHist"         
 [6] "AUCell_plotTSNE"          "aucellResults"            "cbind"                    "getAssignments"           "getAUC"                  
[11] "getRanking"               "getSetNames"              "getThresholdSelected"     "nGenes"                   "orderAUC"                
[16] "plotEmb_rgb"              "plotGeneCount"            "plotTsne_cellProps"       "rbind"                    "setGeneSetNames"         
[21] "subsetGeneSets"           "updateAucellResults"
crotoc commented 11 months ago

The same problem here. Do you have a solution?

crotoc commented 11 months ago

I updated to 1.22 and it works