AUCell is an R-package to analyze the state of gene-sets in single-cell RNA-seq data (i.e. identify cells with active gene signatures).
Availability:
The newest stable version of AUCell is available in Bioconductor. The package also contains a tutorial (vignette) with information on how to run AUCell and how to interprete its results.
This Github repository is meant mostly for development. "Use at your own risk" :-). Developers are welcome to contribute.