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aertslab
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SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Installation error
#107
ghost
closed
2 years ago
0
Break down the S4 class object of 3.4_regulonAUC.Rds
#106
candacelei
closed
2 years ago
0
perhaps a bug in: aux_export2scope.R
#105
fentouxungui
closed
4 years ago
2
Sort by cell type in Step 4 heatmaps
#104
Gorman222
closed
2 years ago
0
runSCENIC_1_coexNetwork2modules(scenicOptions) stops running
#103
candacelei
opened
4 years ago
0
There is nothing in https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/
#102
candacelei
closed
4 years ago
3
difficulties to import databases
#101
biosupi
closed
2 years ago
4
Link does not work
#100
murphycj2
closed
4 years ago
2
Error loading .loom file created using Seurat in SCENIC
#99
swokybio
closed
3 years ago
2
restart Genie3 where crashed
#98
ONeillMB1
closed
4 years ago
4
Error with cellInfo
#97
KatjaRM
closed
5 years ago
12
Subsetting AUCmatrix; Understanding the output after pruning
#96
saeedfc
closed
2 years ago
0
can not load example data
#95
fangling0913
closed
2 years ago
1
runSCENIC_3_scoreCells Error
#94
Conorisco
opened
5 years ago
4
R crashes @ initializescenic
#93
w2niva
closed
2 years ago
8
Default TSNE setting
#92
wisooshin
closed
2 years ago
0
RcisTarget dataset download error
#91
Ian2696
closed
5 years ago
6
Update geneFiltering
#90
davisidarta
closed
5 years ago
0
Include targets with negative correlation to TFs?
#89
rcw1
opened
5 years ago
2
Error when export data with export2scope function
#88
JarningGau
opened
5 years ago
10
Error in corrMat[tf, targets]: subscript out of bounds
#87
rjb67
closed
5 years ago
1
Unable to install SCopeLoomR
#86
yxiao832
closed
5 years ago
1
Issue installing SCENIC 1.1.2-01
#85
sanjeevRJMU1
closed
5 years ago
3
Which assay should I use?
#84
anyone1985
closed
5 years ago
2
Error in runSCENIC_2_createRegulons (Feather file footer incomplete)
#83
justinesjw
closed
5 years ago
4
running adjacencies - ValueError: Metadata mismatch found in `from_delayed`
#82
ChelseaCHENX
closed
5 years ago
3
This package introduces too much unnecessary dependencies
#81
tanpuekai
closed
5 years ago
2
why is this software so crappy? can't even run the first line?
#80
tanpuekai
closed
5 years ago
4
load a loom file converted from a seurat object
#79
DHGK
closed
5 years ago
1
update vignette to install github version (runCorrelation missing)
#78
hummuscience
closed
5 years ago
1
Update vignette to use bioconductor 3.9
#77
hummuscience
closed
5 years ago
1
register error in runSCENIC_2_createRegulons
#76
WangLab401
closed
3 years ago
8
Adverse correlation between a TF and its regulon: how to explain it?
#75
WeiCSong
closed
5 years ago
1
Could not find function run_SCENIC_4_aucell_binarize
#74
aklobo
closed
5 years ago
3
Comparing SCENIC results between samples
#73
ocqub
closed
2 years ago
1
difference between "TF" regulon and "TF_extended" regulon?
#72
WeiCSong
closed
5 years ago
2
How to sever the error with all connections are in use?
#71
wkkion
closed
5 years ago
1
Metadata mismatch found in `from_delayed`
#70
zhangbaso
closed
5 years ago
3
AUCell_exploreThresholds bug
#69
XiaomeiLi1
closed
5 years ago
1
geneFiltering-evaluation nested too deeply
#68
shf43
opened
5 years ago
0
apply to zebrafish
#67
yongjieliu
closed
5 years ago
1
Database Download and Loading Error
#66
danielee0707
closed
5 years ago
9
Errors in running runSCENIC_3_scoreCells(): unable to start device PNG
#65
chent5
closed
5 years ago
3
alias_method not possible?
#64
richmolj
closed
5 years ago
0
"Error in metadataFeather(path) : IO error: Failed to open file" in genefiltering()
#63
chent5
closed
5 years ago
5
Results Files(.Rds)
#62
danjong99
closed
5 years ago
1
Question about databases
#61
YandongZheng
closed
5 years ago
5
I can't open the install tutorial html
#60
Shiywa
closed
5 years ago
2
fatal error in genefiltering
#59
wkkion
closed
5 years ago
2
importGRNBoostResults() - help
#58
ltosti
closed
5 years ago
1
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