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pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.
Installation
To install pycistarget::
$ conda create --name scenicplus python=3.11 -y
$ conda activate scenicplus
$ git clone https://github.com/aertslab/scenicplus
$ cd scenicplus
$ pip install .
Check version
To check your pycistarget version::
import pycistarget
pycistarget.__version__
Questions?
Reference
Bravo Gonzalez-Blas, C. & De Winter, S. et al. (2022). SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks <https://www.biorxiv.org/content/10.1101/2022.08.19.504505v1>
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