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aetherAI / whole-slide-cnn

This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological classification of lung cancer types by deep learning".
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trained model availability? #1

Closed qwang-big closed 3 years ago

qwang-big commented 3 years ago

Dear authors,

I am led here following your paper in nature communications. I wonder is the model file available for a test on some in-house whole slide images? Thanks!

Best regards, QW

luciantunez commented 3 years ago

same here! thanks :)

chenchc commented 3 years ago

Hi QW and luciantunez,

Sorry for the late response. Somehow Github didn't notify me of this...

We cannot release the model file trained on our in-house lung data set due to privacy issues. However, we can prepare a model trained on public datasets, TCGA-LUAD and TCGA-LUSC, for you to evaluate. Please give me a few days to get this done. Thanks.

Best, Chi-Chung

luantunez commented 3 years ago

Thank you very much! You are really kind!

chenchc commented 3 years ago

Hi @qwang-big @luantunez and @luciantunez,

Glad to tell you that we have uploaded a pre-trained model trained by the TCGA-LUAD and TCGA-LUSC datasets. Please see the info on the homepage and have a try. Feel free to contact me if you encounter any problems.

Best, Chi-Chung