LDStreamHMMLearn

Install

Download Miniconda for Python 3.5 (http://conda.pydata.org/miniconda.html)
conda config --add channels omnia
conda install pyemma-dev to get the development version
conda remove msmtools --force to avoid interference with locally-built msmtools
Download msmtools from https://github.com/alexlafleur/msmtools and unzip
execute python setup.py install in the msmtools root directory
Download or clone LDStreamHMMLearn (see Running Scripts below for options)
execute python setup.py install in the LDStreamHMMLearn root directory
execute conda config --add channels conda-forge
execute conda update msmtools

Create a PyCharm project containing LDStreamHMMLearn (e.g. clone it within Pycharm)
From Preferences > Project: LDStreamHMMLearn > Project Interpreter, select the miniconda python interpreter (3.5.2 at the time of writing)

examplary evaluation script execution:

python -c 'from evaluate_deciles import Decile_Evaluator as s; dec = s(); dec.test_evaluate_deciles_qmm_mu()'