LDStreamHMMLearn
Install
- Download Miniconda for Python 3.5 (http://conda.pydata.org/miniconda.html)
conda config --add channels omnia
conda install pyemma-dev
to get the development version
conda remove msmtools --force
to avoid interference with locally-built msmtools
- Download msmtools from https://github.com/alexlafleur/msmtools and unzip
- execute
python setup.py install
in the msmtools root directory
- Download or clone LDStreamHMMLearn (see Running Scripts below for options)
- execute
python setup.py install
in the LDStreamHMMLearn root directory
- execute
conda config --add channels conda-forge
- execute
conda update msmtools
Running Scripts
From PyCharm
- Create a PyCharm project containing LDStreamHMMLearn (e.g. clone it within Pycharm)
- From Preferences > Project: LDStreamHMMLearn > Project Interpreter, select the miniconda python interpreter (3.5.2 at the time of writing)
From Command Line
examplary evaluation script execution:
python -c 'from evaluate_deciles import Decile_Evaluator as s; dec = s(); dec.test_evaluate_deciles_qmm_mu()'