Transcriptome-wide Analysis of Differential Expression (TRADE) is a method to estimate the distribution of differential expression effects. TRADE is described in detail here
Setting up TRADE on your machine
To install TRADE in R, run: devtools::install_github("ajaynadig/TRADE")
Documentation
For documentation and example TRADE workflows, please see the wiki.
Dependencies
TRADE requires the following packages, that should be automatically installed when you install TRADE:
ashr2.2mashr0.2.79 (Note: this package also requires an installation of GNU Scientific Library)doBy4.6.20ggplot23.5.0