Popari is a versatile framework for joint analysis and investigation of complex spatial transcriptomics datasets. Read the documentation (including installation instructions) here.
:warning: Popari is still under active development. Check back in a bit for a more complete user experience!
pip install popari
pip install hatch
pip install keyrings.alt
hatch build
hatch publish
Username: __token__
Password: {API token for PyPI}
To run the provided tests and ensure that SpiceMix can run on your platform, follow the instructions below:
git clone https://github.com/alam-shahul/SpiceMixPlus.git
pytest
in your environment.
pip install pytest
python -m pytest -s tests/test_popari_shared.py
Assuming you have CMake:
docs/
.
cd docs/
pip install -r requirements.txt
make clean
make html