alan-turing-institute network-comparison issues

alan-turing-institute / network-comparison

An R package implementing the NetEMD and NetDis network comparison measures

MIT License

14 stars 3 forks source link

issues

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Use fast C++ code to convert observations to histograms

#99 martintoreilly closed 6 years ago
1
add weighted statistic

#98 andeElliott opened 6 years ago
0
Hashing and Dhist creation

#97 andeElliott opened 6 years ago
0
Add sudo:false option to travis.yml to try and fix caching

#96 martintoreilly closed 6 years ago
2
Fix package caching in Travis CI

#95 martintoreilly closed 6 years ago
1
Fix test that broke with upgrade to R v3.4.2+ closes #93

#94 martintoreilly closed 6 years ago
1
Fix Travis CI failure in master

#93 martintoreilly closed 6 years ago
2
Faster dhist creation

#92 andeElliott opened 6 years ago
0
Update paper references and links to reflect acceptance and journals

#91 martintoreilly opened 6 years ago
0
Make tests take less time

#90 martintoreilly opened 6 years ago
0
Interfaces branch

#89 andeElliott opened 6 years ago
2
Calculate MinEMD^2 using convolution

#88 martintoreilly opened 6 years ago
4
Add tests for large values and for the offsets

#87 andeElliott opened 6 years ago
0
Rcpp versions

#86 andeElliott opened 6 years ago
3
Accurate offset

#85 andeElliott closed 6 years ago
4
Right way to report offsets

#84 andeElliott closed 6 years ago
2
added a line to remove the mean before computing the variance

#83 andeElliott closed 6 years ago
6
Inaccuracies in net_emd for counts with high values.

#82 andeElliott closed 6 years ago
0
Python example

#81 andeElliott opened 7 years ago
2
Add equality comparison method to dhist (issue 76)

#80 martintoreilly closed 7 years ago
1
Rename dhist to emf

#79 martintoreilly opened 7 years ago
0
NetEMD not zero when relabelled graph with isolate compared to itself

#78 martintoreilly closed 6 years ago
5
Netdis_GP_approximation

#77 leospinaf opened 7 years ago
0
Add equality comparison method to dhist

#76 martintoreilly closed 6 years ago
1
Re-add fixed step EMD minimisation (issue #74)

#75 martintoreilly closed 6 years ago
3
Re-add "fixed-step" EMD minimisation

#74 martintoreilly closed 6 years ago
2
Add tests for analytical NetEMD distributions (issue #70)

#73 martintoreilly closed 7 years ago
2
Custom weights

#72 andeElliott closed 7 years ago
4
Simplify graph when generating GDD

#71 andeElliott closed 7 years ago
5
Add tests to verify NetEMD is correct for distributions with analytical solution

#70 martintoreilly closed 7 years ago
1
Visualising network differences in terms of NetEMD + Netdis

#69 martintoreilly opened 7 years ago
0
Add contributor guide to Github repository

#68 martintoreilly opened 7 years ago
0
Fix test that broke with update to igraph package

#67 martintoreilly closed 7 years ago
1
Characterise performance scaling of package implementation vs theory

#66 martintoreilly opened 7 years ago
0
Fix Travis CI failure for commit that has previously passed

#65 martintoreilly closed 7 years ago
2
Speed up "exhaustive" EMD minimisation

#64 martintoreilly opened 7 years ago
7
Add "exhaustive" option for EMD minimisation for NetEMD

#63 martintoreilly closed 7 years ago
0
Amend count_orbits to gracefully handle single node graphs

#62 martintoreilly closed 7 years ago
1
Add support for directed graphs (Stuart's code + possibly directed orbit counting code from Luis)

#61 martintoreilly opened 7 years ago
0
Create script to reproduce Netdis paper outputs

#60 martintoreilly opened 7 years ago
0
Generate a readthedocs style documentation site and automatically build as part of CI

#59 martintoreilly opened 7 years ago
1
Add NetEMD paper package to CRAN and/or Bioconductor

#58 martintoreilly opened 7 years ago
1
Create script to reproduce NetEMD paper outputs

#57 martintoreilly opened 7 years ago
0
Review public methods and trim to small set for v1.0 API

#56 martintoreilly opened 7 years ago
0
Add co-authors to R package meta-data

#55 martintoreilly opened 7 years ago
1
Add method for generating Netdis measure between two graphs

#54 martintoreilly closed 7 years ago
1
Add parallel processing for Windows

#53 martintoreilly opened 7 years ago
1
Avoid parallel processing error on Windows

#52 martintoreilly closed 7 years ago
4
Revise / extend VirusPPI and Random graph based tests

#51 martintoreilly opened 7 years ago
0
Automatically upload binaries to Github releases

#50 martintoreilly opened 7 years ago
0

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