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alanocallaghan
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scater
Clone of the Bioconductor repository for the scater package.
https://bioconductor.org/packages/devel/bioc/html/scater.html
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plotExpression Group Labels
#212
DarioS
closed
3 weeks ago
4
Update plotExpression.R
#211
PeteHaitch
closed
3 months ago
3
Resync the package with the most recent developments in packages SparseArray and DelayedArray
#210
hpages
closed
3 months ago
1
plotReducedDim hex
#209
DarioS
closed
4 months ago
4
Support box plot in addition to violin plot
#208
TuomasBorman
closed
4 months ago
10
Box plot instead of violin plot
#207
TuomasBorman
closed
4 months ago
3
Problem with deprecated argument in runPCA
#206
lvkunz
closed
6 months ago
3
runPCA Target Rank Error or Additional Right Arguments Warning
#205
DarioS
closed
3 months ago
10
Specifying a Custom Dimension Reduction Name Causes Plotting Error
#204
DarioS
closed
8 months ago
0
group_by for Faceting
#203
DarioS
closed
9 months ago
1
runPCA Variance Explained not Recorded
#202
DarioS
closed
11 months ago
1
Matrix 1.6.2 update as_cholmod_sparse issue with runPCA
#201
Michael-Geuenich
closed
4 months ago
3
Column names not showing up in plotGroupedHeatmap()
#200
ycl6
closed
1 year ago
3
Strange warning
#199
RiboRings
closed
1 year ago
2
add a half violin function
#198
shangguandong1996
closed
1 year ago
3
Quantile cutoffs in UMAP plots
#197
jfreimer
opened
1 year ago
4
partial match argument warning/error
#196
LiNk-NY
closed
1 year ago
4
PlotGroupedHeatmap - column clustering
#195
angkoomin
closed
11 months ago
2
Change from assay_name to assay.type
#194
antagomir
closed
1 year ago
13
Methods to deal with overplotting large datasets: scattermore and binning
#193
lambdamoses
closed
1 year ago
11
Gene names in nmf basis
#192
liron27
closed
1 year ago
2
Use scattermore to speed up plotColData and plotReducedDim for large datasets
#191
lambdamoses
closed
1 year ago
4
Colour mismatch in violin plots
#190
alanocallaghan
closed
1 year ago
0
Argument naming: "assay_name" (scater) vs. "assay.type" (scuttle)
#189
antagomir
closed
1 year ago
2
fix wrong block argument
#188
Yunuuuu
closed
1 year ago
3
Adding assay_name aliases
#187
antagomir
closed
1 year ago
13
Adding alias to exprs_values argument
#186
antagomir
closed
1 year ago
3
Include colData in plotReducedDim ggplot object p$data?
#185
antagomir
closed
1 year ago
5
plotPCA not coloring points
#184
lambdamoses
closed
1 year ago
2
aes_string deprecation leads to incredibly hacky code
#183
alanocallaghan
closed
11 months ago
4
ggplot2 deprecations and test cases
#182
alanocallaghan
closed
1 year ago
0
ggbeeswarm dependency
#181
alanocallaghan
closed
1 year ago
1
fix wrong index in .subset2index
#180
Yunuuuu
closed
1 year ago
6
fix wrong group factor levels
#179
Yunuuuu
closed
1 year ago
2
add point_shape argument
#178
Yunuuuu
closed
1 year ago
3
Check for rowData cols in altExp
#177
samuel-marsh
closed
1 year ago
1
plotGroupedHeatmap not colouring appropriately.
#176
ellispatrick
closed
1 year ago
1
fill_by for violin plots
#175
alanocallaghan
opened
1 year ago
7
Option not to plot the points in violin plots
#174
lambdamoses
closed
1 year ago
5
Create rasters for plots involving many, many points
#173
LTLA
closed
2 years ago
4
can plotUMAP offer a order parameter
#172
shangguandong1996
closed
2 years ago
6
Add densvis options; resolve #159
#171
alanocallaghan
closed
2 years ago
1
Implement projection of reducedDims (#168), import more (#169), colour (#150)
#170
alanocallaghan
closed
2 years ago
1
Use import or importFrom for `pheatmap`
#169
ycl6
closed
2 years ago
3
Add a `projectReducedDims` function
#168
LTLA
closed
2 years ago
5
Handling genes with zero expression when using `scale = TRUE` in `plotDots()`
#167
ycl6
closed
2 years ago
3
`plotDots` should document that `features=` can accept a factor to control the order
#166
LTLA
closed
2 years ago
6
Pass to num_jobs for snifter
#165
alanocallaghan
closed
2 years ago
0
Centering labels in plotReducedDim with force = 0
#164
ycl6
closed
2 years ago
3
Issue with runTSNE and deprecated parameter, i.e. use_dimred?
#163
gabrielet
closed
2 years ago
1
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