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alexpiper
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taxreturn
An R package for creating taxonomic reference databases for metabarcoding studies
GNU General Public License v3.0
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blast()/blast_assign_species()
#26
gbchauhan
opened
2 years ago
3
Error attempting to download 16s sequences
#25
brandonhoenig
closed
2 years ago
1
tax2tree
#24
padpadpadpad
opened
2 years ago
1
memory allocation error with clean_seqs() when calling checkForRemoteErrors()
#23
morien
closed
3 years ago
4
error in fetchSeqs(), object 'search_results' not found
#22
morien
closed
3 years ago
1
fetchSeqs: Invalid Multibyte string error with some BOLD entries
#21
morien
opened
3 years ago
2
Error: Service Unavailable (HTTP 503) when using a list of taxa and fetchSeqs with BOLD
#20
morien
opened
3 years ago
2
prune_taxonomy function
#19
alexpiper
opened
3 years ago
0
Error introduced when / in fetchseqs query
#18
alexpiper
closed
3 years ago
0
Add delimiter option for resolve_taxonomy
#17
alexpiper
closed
3 years ago
0
Fix checks for taxdump database
#16
alexpiper
closed
3 years ago
0
Add vignettes for optimising thresholds
#15
alexpiper
closed
3 years ago
0
Remove dependency on biofiles?
#14
alexpiper
closed
3 years ago
2
Fetchseqs out.dir is broken
#13
alexpiper
closed
3 years ago
0
Remove dependency on insect::purge
#12
alexpiper
closed
3 years ago
0
Add unit testing
#11
alexpiper
opened
4 years ago
0
Retrieving COI from mitogenome
#10
alexpiper
closed
4 years ago
1
Add a random sample function to fetchSeqs
#9
alexpiper
closed
3 years ago
2
Fetchseqs add single file outpath option
#8
alexpiper
closed
3 years ago
1
fetchseqs downto is redundant
#7
alexpiper
closed
4 years ago
1
bbtools trim bug in restrictleft
#6
alexpiper
closed
4 years ago
1
Remove reliance on taxizedb
#5
alexpiper
closed
4 years ago
2
Change default ranks for output_db
#4
alexpiper
closed
4 years ago
0
Allow passing database to output_db
#3
alexpiper
closed
4 years ago
0
clean_seqs issues
#2
alexpiper
closed
3 years ago
1
Add function to check for stop codons
#1
alexpiper
closed
4 years ago
1