alexrhowe APOLLO issues

alexrhowe / APOLLO

Atmosphere retrieval code for exoplanets

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Check for existing output files to prevent unwanted overwriting

#103 alexrhowe opened 1 year ago
0
Test whether we should be including NormSpec in setting up the binned specturm plot.

#102 alexrhowe opened 1 year ago
0
Decide on an official set of goodness-of-fit statistics.

#101 alexrhowe opened 1 year ago
0
lnprior() can underflow with a large number of parameters.

#100 alexrhowe closed 1 year ago
1
Add an error message for when the input spectrum goes outside the cross section tables.

#99 alexrhowe opened 2 years ago
0
Harmonize Plot Apollo with the plotting functions in Apollo main.

#98 alexrhowe opened 2 years ago
0
Should Convolve, Binning, Degrade be ints or floats?

#97 alexrhowe opened 2 years ago
0
Call only the clear spectrum calculator if there are no clouds.

#96 alexrhowe closed 2 years ago
1
Double-check the new version of SliceModel() vs. Arthur's

#95 alexrhowe closed 2 years ago
1
Consistency of "h2" vs "h2he" in ApolloFunctions.py

#94 alexrhowe closed 1 year ago
1
Ensure the parameter files have enough significant figures.

#93 alexrhowe opened 2 years ago
0
Allow for different prior functional forms per parameter.

#92 adadams opened 2 years ago
0
Handling of overloaded parameters (e.g. Rad vs RtoD2U)

#91 alexrhowe closed 2 years ago
1
Move the entire code segment for binning the spectrum to ApolloFunctions.py.

#90 alexrhowe opened 2 years ago
1
Handle gravity, P_cl, etc. upfront, with a flag to determine the output format.

#89 alexrhowe opened 2 years ago
1
Move the T-P profiles and cloud models as cleanly as possible to separate Python files.

#88 alexrhowe closed 1 year ago
1
Make the type of T-P interpolation (linear, cubic, etc.) a model parameter.

#87 alexrhowe opened 2 years ago
0
Fully incorporate the parametric T-P profile into TP_profiles.py.

#86 alexrhowe closed 1 year ago
1
Update the README file.

#85 alexrhowe opened 2 years ago
0
Does it make sense to have defaults.py and the like in "user" as opposed to "src"?

#84 alexrhowe closed 2 years ago
1
Pull out as much of the parametrization of cloud opacities out of the C++ side

#83 adadams closed 2 years ago
1
The prior function breaks due to faulty bounds if any of the uncertainties in the input spectrum are zero.

#82 alexrhowe opened 2 years ago
0
Implement reduced chi-squared calculations.

#81 alexrhowe closed 2 years ago
2
Revert "Hd 106906 b"

#80 adadams closed 2 years ago
0
Hd 106906 b

#79 adadams closed 2 years ago
0
HD 106906 b

#78 adadams closed 2 years ago
0
Pulling latest Github version of APOLLO into HD 106906 b branch

#77 adadams closed 2 years ago
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Establishing the branch of the HD 106906 paper

#76 adadams closed 2 years ago
0
Version in HD 106906 b paper

#75 adadams closed 2 years ago
0
Revert "Version used for HD 106906 paper"

#74 adadams closed 2 years ago
0
Version used for HD 106906 paper

#73 adadams closed 2 years ago
0
Decide on uniform input/output formats.

#72 alexrhowe opened 2 years ago
0
Add an option to create a "stats" corner plot to APOLLO main.

#71 alexrhowe opened 2 years ago
0
Make sure that scrapping the radius ratio parameter didn't break transits.

#70 alexrhowe closed 2 years ago
1
Typo in BinSpec() causes forward model on banded data to fail after the 1st band

#69 adadams closed 2 years ago
2
Add general scaling parameters for flux calibration, e.g. what we have on J, H, K

#68 adadams closed 2 years ago
0
The reduced chi-squared calculation breaks when the spectrum is convolved and/or binned.

#67 alexrhowe opened 2 years ago
2
MakePlanet() must be called before each call to GetModel(), to get consistent results when multiple bands are present

#66 adadams closed 2 years ago
3
getTauProf() has its comments for the end of the i, j loops switched

#65 adadams closed 2 years ago
1
Collect species information in a single location

#64 adadams closed 2 years ago
1
The header of the samples file is wrong when some of the variables are fixed.

#63 alexrhowe closed 2 years ago
1
Use zorder to plot model spectra on top of errorbars.

#62 alexrhowe closed 1 year ago
2
Make checking for optional packages (e.g. "corner") automatic

#61 adadams closed 2 years ago
1
Tweak the likelihood functions to follow a functional code paradigm

#60 adadams opened 3 years ago
0
readopac() doesn't actually use wavens.

#59 alexrhowe closed 2 years ago
2
Make sure the JWST model pipeline works with the new wavelength paradigm.

#58 alexrhowe opened 3 years ago
0
For runs with fixed parameters, the samples file should omit those parameter names

#57 adadams closed 1 year ago
1
The retrieved parameter file could match the top-level information from the input file

#56 adadams closed 2 years ago
1
Add flux calibration parameters

#55 adadams closed 2 years ago
1
The print statement of "params1" at the end of the likelihood function should fail

#54 adadams closed 2 years ago
1