Rationale

This repository contains the functionality to standardize the Bioblitz dataset of the AlienCSI project []() to a Darwin Core Archive that can be harvested by a GBIF IPT.

Workflow

source data → Darwin Core mapping script → generated Darwin Core files

Published dataset

• [Dataset on the IPT]()
• [Dataset on GBIF]()

Repo structure

The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED should not be edited manually.

├── README.md              : Description of this repository
├── LICENSE                : Repository license
├── bioblitz-occurrences.Rproj : RStudio project file
├── .gitignore             : Files and directories to be ignored by git
├── src
│   ├── dwc_mapping.Rmd    : Darwin Core mapping script
└── data
│   ├── raw                : Fetched data
│   └── processed          : Darwin Core output of mapping script GENERATED

Installation

1. Clone this repository to your computer
2. Open the RStudio project file
3. Run install_packages.R to install any required packages
4. Open fetch_data.Rmd R Markdown file in RStudio to fetch data manually
5. Open the dwc_mapping.Rmd R Markdown file in RStudio to map data to DwC manually
6. Click Run > Run All to generate the processed data

License

MIT License for the code and documentation in this repository. The included data is released under another license.