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alimanfoo
/
anjl
A neighbour-joining library for Python.
https://alimanfoo.github.io/anjl
MIT License
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Parallelize minimisation of Q in dynamic algorithm
#55
alimanfoo
opened
1 day ago
3
Parallelize update of Q in dynamic algorithm
#54
alimanfoo
opened
1 day ago
0
Add copy parameter
#53
alimanfoo
closed
3 days ago
0
Remove some code cruft
#52
alimanfoo
closed
3 days ago
0
Consider accepting condensed distance matrix as input and using internally for reduced memory
#51
alimanfoo
opened
3 days ago
0
Consider accepting a copy argument allowing the input distance matrix to be used
#50
alimanfoo
closed
3 days ago
0
Code cruft - only update lower triangle of the distance matrix
#49
alimanfoo
closed
3 days ago
1
Code cruft - searching lower triangle
#48
alimanfoo
closed
3 days ago
0
Code cruft - only need to update lower triangle of distance matrix
#47
alimanfoo
closed
3 days ago
1
Code cruft - no need for child ordering
#46
alimanfoo
closed
3 days ago
1
Code cruft
#45
alimanfoo
closed
3 days ago
0
Update docs
#44
alimanfoo
closed
4 days ago
0
Benchmark post 1.2.0
#43
alimanfoo
closed
4 days ago
0
Dynamic neighbour-joining
#42
alimanfoo
closed
4 days ago
7
Dynamic and heuristic neighbour-joining?
#41
alimanfoo
closed
4 days ago
0
Boundscheck if testing
#40
alimanfoo
closed
1 week ago
0
Deal with missing values in leaf data
#39
alimanfoo
closed
1 week ago
0
Drop NA from leaf colour values before passing to np.unique()
#38
alimanfoo
closed
1 week ago
0
Consider always running tests with bounds check enabled
#37
alimanfoo
closed
1 week ago
0
Minor trimming of unnecessary data updates
#36
alimanfoo
closed
1 week ago
0
Benchmark post 1.1.1
#35
alimanfoo
closed
1 week ago
0
Try uint32 in the rapid algorithm
#34
alimanfoo
closed
1 week ago
1
Use unsigned integers for indexing
#33
alimanfoo
closed
1 week ago
0
Rerun benchmarks
#32
alimanfoo
closed
1 week ago
0
Try unsigned integers for indexing variables
#31
alimanfoo
closed
1 week ago
0
Improve rapid search strategy
#30
alimanfoo
closed
1 week ago
0
Remove self comparisons during update
#29
alimanfoo
closed
1 week ago
0
Improving the rapid algorithm? 🤔
#28
alimanfoo
closed
4 days ago
2
Benchmarked
#27
alimanfoo
closed
2 weeks ago
0
Update docs after 1.0 release
#26
alimanfoo
closed
2 weeks ago
0
Add docstrings; rename plot(); add __version__; use eager compilation
#25
alimanfoo
closed
2 weeks ago
0
Consider renaming plot_equal_angle() to plot() 📊
#24
alimanfoo
closed
2 weeks ago
0
Launch in colab 🚀
#23
alimanfoo
opened
2 weeks ago
0
Improve docs
#22
alimanfoo
closed
2 weeks ago
0
Consider eager compilation for numba functions ⚙️
#21
alimanfoo
closed
2 weeks ago
0
Add __version__ ✌🏻
#20
alimanfoo
closed
2 weeks ago
0
Add docs
#19
alimanfoo
closed
2 weeks ago
0
Improve type annotations
#18
alimanfoo
closed
2 weeks ago
0
Minor optimisation and code maintenance
#17
alimanfoo
closed
2 weeks ago
0
Include some example data within the package
#16
alimanfoo
closed
2 weeks ago
0
Create documentation site 🚀
#15
alimanfoo
closed
2 weeks ago
4
Add unit tests for decorating a tree 🎄
#14
alimanfoo
opened
2 weeks ago
0
Run a benchmark comparing with existing implementations 🏎️
#13
alimanfoo
closed
2 weeks ago
1
Include some example data within the package 🛝
#12
alimanfoo
closed
2 weeks ago
0
Use numpy typing for type annotations 🧙🏻♀️
#11
alimanfoo
closed
2 weeks ago
0
Docstrings 📜
#10
alimanfoo
closed
2 weeks ago
0
Misc improvements
#9
alimanfoo
closed
2 weeks ago
0
Rapid neighbour-joining
#8
alimanfoo
closed
2 weeks ago
3
More plotting options
#7
alimanfoo
closed
2 weeks ago
0
More plotting features
#6
alimanfoo
closed
3 weeks ago
0
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