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alimanfoo
/
pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
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Scheduled monthly dependency update for September
#166
pyup-bot
opened
1 week ago
0
Scheduled monthly dependency update for August
#165
pyup-bot
closed
1 week ago
1
Scheduled monthly dependency update for July
#164
pyup-bot
closed
1 month ago
1
Scheduled monthly dependency update for June
#163
pyup-bot
closed
2 months ago
1
Scheduled monthly dependency update for May
#162
pyup-bot
closed
3 months ago
1
Scheduled monthly dependency update for April
#161
pyup-bot
closed
4 months ago
1
Scheduled monthly dependency update for March
#160
pyup-bot
closed
5 months ago
1
Scheduled monthly dependency update for February
#159
pyup-bot
closed
6 months ago
1
Scheduled monthly dependency update for January
#158
pyup-bot
closed
7 months ago
1
AttributeError: module 'pysam.libcalignmentfile' has no attribute 'IteratorColumnAll'
#157
mmnascimento
opened
9 months ago
0
Scheduled monthly dependency update for December
#156
pyup-bot
closed
8 months ago
1
PileupColumn.get_query_positions() behavior differs from PileupRead.query_position
#155
jkoubele
closed
9 months ago
0
Scheduled monthly dependency update for November
#154
pyup-bot
closed
9 months ago
1
Scheduled monthly dependency update for October
#153
pyup-bot
closed
10 months ago
1
Scheduled monthly dependency update for September
#152
pyup-bot
closed
11 months ago
1
Scheduled monthly dependency update for July
#151
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for June
#150
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for May
#149
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for April
#148
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for March
#147
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for January
#146
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for December
#145
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for November
#144
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for October
#143
pyup-bot
closed
1 year ago
1
calling long insertion
#142
rsuseno2907
closed
2 years ago
0
Scheduled monthly dependency update for September
#141
pyup-bot
closed
1 year ago
1
Scheduled monthly dependency update for August
#140
pyup-bot
closed
2 years ago
1
Scheduled monthly dependency update for July
#139
pyup-bot
closed
2 years ago
1
Bump numpy from 1.21.0 to 1.22.0
#138
dependabot[bot]
opened
2 years ago
0
Scheduled monthly dependency update for May
#137
pyup-bot
closed
2 years ago
1
Scheduled monthly dependency update for April
#136
pyup-bot
closed
2 years ago
1
Running pysamstats with input from /tmp
#135
stewalsh04
closed
2 years ago
1
Scheduled monthly dependency update for February
#134
pyup-bot
closed
2 years ago
1
Scheduled monthly dependency update for January
#133
pyup-bot
closed
2 years ago
1
where to download pysamstats license?
#132
N-damo
opened
2 years ago
1
Scheduled monthly dependency update for December
#131
pyup-bot
closed
2 years ago
1
Scheduled monthly dependency update for November
#130
pyup-bot
closed
2 years ago
1
Scheduled monthly dependency update for October
#129
pyup-bot
closed
2 years ago
1
Scheduled monthly dependency update for September
#128
pyup-bot
closed
2 years ago
1
Replacing assertions with explicit error messages
#127
fedarko
opened
3 years ago
0
Scheduled monthly dependency update for August
#126
pyup-bot
closed
3 years ago
1
Fix for pysam 0.16
#125
alimanfoo
opened
3 years ago
2
Scheduled monthly dependency update for July
#124
pyup-bot
closed
3 years ago
0
recompiled opt.c with updated cython version
#123
gtonkinhill
closed
3 years ago
2
compatibility with python 3.9
#122
gtonkinhill
opened
3 years ago
2
Scheduled monthly dependency update for June
#121
pyup-bot
closed
3 years ago
1
Scheduled monthly dependency update for May
#120
pyup-bot
closed
3 years ago
1
ValueError: no index available for pileup
#119
544728460
closed
3 years ago
3
Scheduled monthly dependency update for April
#118
pyup-bot
closed
3 years ago
1
Scheduled monthly dependency update for March
#117
pyup-bot
closed
3 years ago
1
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