ms-jaric-2020-fish-reaction-to-seiche

This repository hosts the data processing and analysis of the fish reaction to seiche events in Lake Milada, Czechia.

Structure

├── ms-jaric-2020-fish-reaction-to-seiche.Rproj
|
├── data
│   ├── products    - any data derived from raw data
│   └── raw         - raw data
│
├── main.R          - main script
├── outputs         - any results
├── R               - scripts sourced by main.R
│
└── README.md

How to start

1. Copy file .Renviron_template to a new file called .Renviron and update your database credentials there. The file is git ignored so the credentials should not be accidentaly pushed to the upstream repository. Finally, restart your R session - changes to .Renviron take effect when the new session is initialized.

2. Open .Rproj in Rstudio

3. Install package renv

   install.packages("renv")

4. Install all required packages locally into new environment

   renv::restore()

5. Run main.R script