allen-cell-animated colorizer-data issues

allen-cell-animated / colorizer-data

example scripts and utilities for preparing data for the time series colorizer app

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feature: Add support for backdrop images in simplified TFE conversion API (pt. 3)

#66 ShrimpCryptid opened 23 hours ago
1
Update documentation to use new updated API

#65 ShrimpCryptid opened 1 day ago
0
Automated linting/formatting tests

#64 ShrimpCryptid opened 2 days ago
0
feature: Additional unit tests for simplified TFE conversion API (pt. 2)

#63 ShrimpCryptid opened 5 days ago
0
feature: Added pytest workflow

#62 ShrimpCryptid closed 4 days ago
0
feature: Simplified dataset conversion API (pt. 1)

#61 ShrimpCryptid closed 23 hours ago
0
doc: Update documentation links, add example description to dataset

#60 ShrimpCryptid closed 2 months ago
0
feature: Feature descriptions

#59 ShrimpCryptid closed 3 months ago
2
Idea: UI for converting datasets

#58 ShrimpCryptid opened 3 months ago
1
fix: Fixed bug where NoneType is not recognized

#56 ShrimpCryptid closed 3 months ago
0
fix: Added additional checks for numpy values

#55 ShrimpCryptid closed 4 months ago
0
Add GitHub action to run `pytest`

#54 ShrimpCryptid closed 2 days ago
0
feature: Write features as `.parquet` binaries

#53 ShrimpCryptid closed 4 months ago
0
fix: Fixed missing project version number

#52 ShrimpCryptid closed 4 months ago
0
doc: Getting started guide

#51 ShrimpCryptid closed 4 months ago
2
Add version numbers for setuptools

#50 pgarrison closed 4 months ago
0
refactor: Renamed to Timelapse Feature Explorer

#49 ShrimpCryptid closed 5 months ago
0
Add a getting started guide

#48 ShrimpCryptid closed 4 months ago
1
Rename to Timelapse Feature Explorer

#47 ShrimpCryptid closed 5 months ago
0
feat: Outliers + overrides for feature min/max

#46 ShrimpCryptid closed 7 months ago
0
Publish to PyPi

#45 ShrimpCryptid opened 7 months ago
1
Reduce data script complexity

#44 ShrimpCryptid opened 7 months ago
0
feat: Validate feature keys

#43 ShrimpCryptid closed 7 months ago
0
Check for duplicate feature keys + backdrop keys when writing datasets

#42 ShrimpCryptid closed 7 months ago
0
Bump version: 1.0.0 → 1.1.0

#41 ShrimpCryptid closed 8 months ago
1
add conversion utility for TrackMate data

#40 toloudis opened 8 months ago
1
feature: Update collection JSON to new schema

#39 ShrimpCryptid closed 8 months ago
0
feature: Dataset metadata writing

#38 ShrimpCryptid closed 8 months ago
0
doc: Collection object and metadata spec

#37 ShrimpCryptid closed 8 months ago
1
Update dataset + collection spec with names

#36 ShrimpCryptid closed 8 months ago
0
Turn collection JSON into an object instead of an array

#35 ShrimpCryptid closed 8 months ago
0
fix: Missing version 'v' in README install instructions

#34 ShrimpCryptid closed 9 months ago
0
New release version: v1.0.0

#33 ShrimpCryptid closed 9 months ago
0
Add GitHub Action for running pytest

#32 ShrimpCryptid closed 4 days ago
0
feat: Parallelize `convert_emt_migration_data.py`

#31 ShrimpCryptid closed 9 months ago
1
feature: Auto-detect feature types

#30 ShrimpCryptid closed 9 months ago
1
refactor: Moved data classes to their own file

#29 ShrimpCryptid closed 9 months ago
0
Auto-detect features

#28 ShrimpCryptid closed 9 months ago
0
Downsampling for background images

#27 ShrimpCryptid opened 9 months ago
1
feature: Convert new H2B Derek Dataset

#26 ShrimpCryptid closed 9 months ago
0
Color logging text

#25 ShrimpCryptid opened 9 months ago
1
Keep original segmentation filename when exporting frames?

#24 ShrimpCryptid opened 9 months ago
0
Using `generate_frame_paths` will cause mismatches if datasets skip frames

#23 ShrimpCryptid closed 7 months ago
2
Bounding box data will be missing when running scripts with `--noframes` flag.

#22 ShrimpCryptid closed 9 months ago
1
refactor: Python packaging

#21 ShrimpCryptid closed 9 months ago
0
refactor: Made explicit methods for generating frame paths

#20 ShrimpCryptid closed 9 months ago
0
Allow frames to start at values other than zero during dataset generation

#19 ShrimpCryptid closed 9 months ago
3
Parallelize `convert_emt_migration_data.py`

#18 ShrimpCryptid closed 9 months ago
0
feat: Added parallelization logic to `convert_nucmorph_data.py`

#17 ShrimpCryptid closed 9 months ago
1
Add NucMorph features from 2023 segmentation dataset

#16 pgarrison closed 9 months ago
5