Right now there's a lot of code that is copied and pasted between notebooks and/or notebooks that define a lot of functions and then call them. Function definitions should be moved into .py files so that they can be reused easily and automated with snakemake.
Right now there's a lot of code that is copied and pasted between notebooks and/or notebooks that define a lot of functions and then call them. Function definitions should be moved into .py files so that they can be reused easily and automated with snakemake.