anjoru
commented
6 months ago Thank you for the recipe and helpful comments. Regarding the bird data, i thought i removed it completely, the quality was poor and didn’t think it would be useful. I will make sure to address the other comments. Have s great weekend!
Sent from iPhone.
On Fri, Mar 22, 2024 at 12:44 MutsaN1 @.***> wrote:
Hi Andrew!
I went through and looked at your Manuscript and reproduced code. I think you have a very comprehensive project and I know it will turn out great when you are finished. I have a few things that I took down as notes:
MADAprojectPt2.qmd
CHUNK 5 View the first few rows to confirm it's loaded correctly
head(combined_virus_data) Load complete bird data this uses an absolute path because the file is too large to store on github. the filtered_bird_data.csv file will be the one used for any analysis
bird <- read.table("/Users/andrewruiz/0011508-240216155721649.csv", sep = "\t", header = TRUE, fill = TRUE) Warning: cannot open file '/Users/andrewruiz/0011508-240216155721649.csv': No such file or directoryError in file(file, "rt") : cannot open the connection
This is a hard path so it would need to be changed using the here file. Or in the code, show where to load the data.
CHUNK 16
install.packages(“chromote”)
save_kable(kable_table_isolation_case, file = output_path_png) Error in startup(): ! Chrome debugging port not open after 10 seconds.
IN THE EDA CODE FOLDER
Delete eda.qmd if not using Delete PT3 eda.qmdv2
I might add more but overall you have done very well.
Overall Score: 3
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Hi Andrew!
I went through and looked at your Manuscript and reproduced code. I think you have a very comprehensive project and I know it will turn out great when you are finished. I have a few things that I took down as notes:
MADAprojectPt2.qmd
CHUNK 5
View the first few rows to confirm it's loaded correctly
This is a hard path so it would need to be changed using the here file. Or in the code, show where to load the data.
CHUNK 16
install.packages(“chromote”)
save_kable(kable_table_isolation_case, file = output_path_png) Error in
startup(): ! Chrome debugging port not open after 10 seconds.IN THE EDA CODE FOLDER Delete eda.qmd if not using Delete PT3 eda.qmdv2
I might add more but overall you have done very well.
Overall Score: 3