Small Edits for Code Base

annaritz / cancer-drug-pred

Source code for Cancer Drug Prediction based on Genetic Mutations

GNU General Public License v3.0

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Open annaritz opened 4 years ago

annaritz commented 4 years ago

[x] Update all packages to latest version, fix any compatibility issues.
[x] Rename CancerReadme to README.md
[x] Add some details about the parameters you've fixed
[x] I think you can remove the step about renaming files. Remove the commented files.
[x] Check out the typo in the annotated.py file.
[x] In the README.md, explain what the script outputs.

annaritz commented 4 years ago

[ ] Update the -withAnnotations.py file so it's current. (consider renaming those files to be smaller names) To do that, you can use git mv <oldname> <newname>

annaritz commented 4 years ago

[ ] Investigate Line 113 on the annotations.py file: filtered_labels = [label for +--index,label in enumerate(labels) if index not in empty_label_indices]#feature reduction with error SyntaxError: cannot assign to operator. I suspect it's the +-- issue.

annaritz commented 4 years ago

[ ] Add details about the patient that's selected to the command line output. In general, add a few more print statements that explain each outputted part. Also, when writing a file, print to screen "writing decision tree to "