PyFilesystem2 AnVIL plugin
A plugin for representing AnVIL resources in Python environments as a file system; particularly, in an AnVIL-launched Galaxy instances.
Galaxy installation requirements:
file_sources_conf.yml in the Galaxy config directory with an AnVIL entry:
- doc:
id:
namespace: <your google billing project == Terra namespace >
type: anvil
workspace:
api_url: <OPTIONAL - if not specified default production url will be used>
on_anvil: <OPTIONAL - (true/false) must be true to manage AnVIL workload identity scopes>
drs_url: <OPTIONAL - if not specified default production url will be used>
writable: <OPTIONAL - (true/false) if not specified plugin will be read-only>
NOTES:
doc and id can be any string you choose but type MUST be anvil- for off-AnVIL use, Galaxy and Data Fetch tools require the following environment variables:
GOOGLE_APPLICATION_CREDENTIALS="<path to credentials json>"TERRA_NOTEBOOK_GOOGLE_ACCESS_TOKEN="$(gcloud auth print-access-token)"
Dependencies: