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apetkau
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core-phylogenomics
Pipeline for identifying core SNPs and building a phylogenetic tree
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Smalt fails with compressed fasta files
#22
csieffert
opened
9 years ago
0
Feature reorder snp matrix tree
#21
csieffert
closed
9 years ago
1
Feature reorder snp matrix tree
#20
csieffert
closed
9 years ago
0
Removal of all references to --contig-dir option
#19
csieffert
closed
9 years ago
7
Remove --contig-dir option
#18
apetkau
closed
9 years ago
1
Updated vcf2pseudoalign
#17
apetkau
closed
9 years ago
0
Calling SNPs on non-fastq files
#16
nknox
opened
9 years ago
1
Development
#15
csieffert
closed
9 years ago
7
Updating vcf2pseudoalignment sub module.
#14
csieffert
closed
9 years ago
1
Submodule added to verify unique input file names.
#13
csieffert
closed
9 years ago
11
Add error checking for duplicate files names for input files
#12
apetkau
closed
9 years ago
1
fix bug where invalid position file was required and not optional when using --contig-dir
#11
Takadonet
closed
9 years ago
1
Cleanup of temporary SAM and BAM files
#10
apetkau
closed
9 years ago
0
Cleanup unneeded files
#9
apetkau
closed
9 years ago
1
Fixed up issue with git commit number not showing for vcf2pseudoalign
#8
apetkau
closed
10 years ago
0
Some line options generated for lib/reads2sams.pl are incorrect
#7
apetkau
opened
10 years ago
1
vcf2pseudoalign git commit reported as unknown
#6
apetkau
closed
10 years ago
1
vcf2core stage causes delays when generating core genome images
#5
apetkau
closed
9 years ago
5
Feature/phylip long
#4
apetkau
closed
10 years ago
0
Feature/update install process
#3
apetkau
closed
10 years ago
0
Add ability to handle multiple sets of data within the same sample directory
#2
apetkau
opened
10 years ago
0
Add ability to pass as input a directory structure with mixed single and paired-end reads
#1
apetkau
opened
10 years ago
0