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apfejes
/
epigenetics-software
This repository contains code for epigenetic analysis, including a chip-seq/chip-chip tool, a database and a web server.
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Change wording on the right hand side
#41
apfejes
closed
10 years ago
0
Change icon for SNPs in probe/cpg
#40
apfejes
closed
10 years ago
0
Add more colours
#39
apfejes
closed
3 years ago
0
Reorder the navigation boxes.
#38
apfejes
closed
10 years ago
1
Looking at more than one project at a time fails
#37
apfejes
closed
10 years ago
2
Reorder the colour lists
#36
apfejes
closed
10 years ago
1
Indicate which probes have snps in cpgs and which have snps in probes.
#35
apfejes
closed
10 years ago
1
Generate Manhattan plots for data sets.
#34
apfejes
closed
10 years ago
1
Display Illumina CpG probe id info when you scroll over points
#33
sumaiyai
closed
10 years ago
5
Please put in an option to get metadata back (including compound keys created) from database
#32
sumaiyai
closed
10 years ago
3
Colours used in svg generation are not ideal
#31
apfejes
closed
10 years ago
1
Compound group by fails if item is an integer.
#30
apfejes
closed
10 years ago
0
Selection of compound key disappears
#29
sumaiyai
closed
10 years ago
1
Add filtering for groupby.
#28
apfejes
closed
10 years ago
0
Redirect after login is currently broken
#27
apfejes
closed
10 years ago
0
Write function for creating a table to export functions
#26
apfejes
closed
10 years ago
0
Add MetaData editing functions
#25
apfejes
closed
10 years ago
1
A message should be displayed when the gene search returns nothing.
#24
elodie
closed
10 years ago
0
Gene search box shouldn't be case-specific
#23
elodie
closed
10 years ago
1
Groupby tissue for all data sets
#22
apfejes
closed
10 years ago
1
hide data sets that are not in use
#21
apfejes
closed
3 years ago
1
New button to disable gene tracks.
#20
apfejes
closed
10 years ago
1
User Security/Authentication required
#19
apfejes
closed
10 years ago
3
Genes are not consistently showing up
#18
apfejes
closed
10 years ago
5
Allow the use of compound group-by sets.
#17
apfejes
closed
10 years ago
1
Database takes up a disproportionally large space for methylation data.
#16
apfejes
closed
10 years ago
3
"Group by" field can not be assigned by a user inputting information.
#15
apfejes
closed
10 years ago
1
URI becomes too long with too many samples
#14
apfejes
closed
10 years ago
1
Query page title link
#13
scottdbrown
closed
10 years ago
1
Fixed type errors in parameters (integers saved as strings)
#12
dfornika
closed
11 years ago
0
Completed 'Apply' button in Parameter Editor
#11
dfornika
closed
11 years ago
3
Cosmetic improvements to ParameterEditor
#10
dfornika
closed
11 years ago
0
Added Input File widgets to Parameters Editor
#9
dfornika
closed
11 years ago
4
Added Save, Load functionality to GUI Parameters Editor
#8
dfornika
closed
11 years ago
5
Basic Layout of Parameter GUI
#7
dfornika
closed
11 years ago
1
Implemented 'poison pill' method for interrupting multiprocess queue
#6
dfornika
closed
11 years ago
11
Fixed warning about wrong number of arguments gettin passed to run()
#5
dfornika
closed
11 years ago
2
Fixed import error in WaveGenerator/Utilities/MapMaker.py
#4
dfornika
closed
11 years ago
1
Fixed header in output of Utilities/WaveFileThread.py
#3
dfornika
closed
11 years ago
6
Create tmp directory within repository to dump temporary output to.
#2
dfornika
closed
11 years ago
0
Hard-coded path in Utilities/WigFileThread.py
#1
dfornika
closed
11 years ago
4