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apriha
/
snps
tools for reading, writing, merging, and remapping SNPs
BSD 3-Clause "New" or "Revised" License
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Bump pillow from 8.1.2 to 8.2.0
#134
dependabot[bot]
closed
3 years ago
1
more specific tellmegen detection
#133
afaulconbridge
closed
3 years ago
1
Bump urllib3 from 1.26.4 to 1.26.5
#132
dependabot[bot]
closed
3 years ago
2
return recursive result
#131
afaulconbridge
closed
3 years ago
1
Getting "404: Not Found" when trying to use get_opensnp_datadump_filenames()
#130
mkbond777
closed
3 years ago
2
Refactor I/O classes
#129
apriha
opened
3 years ago
2
v2.1.3
#128
apriha
closed
3 years ago
1
added parallelizer in '_write_vcf' Writer method
#127
gabrielmotaa
closed
3 years ago
0
v2.1.2
#126
apriha
closed
3 years ago
1
Setup GitHub actions
#125
apriha
closed
3 years ago
1
Bump jinja2 from 2.11.2 to 2.11.3
#124
dependabot[bot]
closed
3 years ago
2
Bump pillow from 7.2.0 to 8.1.1
#123
dependabot[bot]
closed
3 years ago
2
Change "generic" source to "unknown"
#122
apriha
opened
3 years ago
0
v2.1.1
#121
apriha
closed
3 years ago
0
AttributeError: 'str' object has no attribute '_output_dir'
#120
lakishadavid
opened
3 years ago
9
Class based source readers?
#119
afaulconbridge
opened
3 years ago
1
improve vcf handling
#118
afaulconbridge
closed
3 years ago
1
openSNPs downloads
#117
afaulconbridge
closed
3 years ago
3
remove singleton metaclass
#116
afaulconbridge
opened
3 years ago
3
remove unnecessary __call__ functions for clarity
#115
afaulconbridge
closed
3 years ago
0
allow sex dedup determination
#114
afaulconbridge
opened
3 years ago
3
v2.1.0
#113
apriha
closed
4 years ago
1
Consolidate issues into one dataframe
#112
apriha
opened
4 years ago
0
Ancestry multiple spaces
#111
afaulconbridge
closed
4 years ago
4
Use set for rsids
#110
afaulconbridge
closed
4 years ago
0
Use Pandas nullable integer for position in for normalized snps dataframe
#109
afaulconbridge
opened
4 years ago
1
Optimize normalized snps dataframe dtypes
#108
apriha
opened
4 years ago
4
Deduplicate loci
#107
apriha
opened
4 years ago
0
Add `chrom` parameter to `SNPs.merge`
#106
apriha
closed
4 years ago
1
Multisample VCF
#105
kkarbasi
opened
4 years ago
1
v2.0.3
#104
apriha
closed
4 years ago
0
v2.0.2
#103
apriha
closed
4 years ago
0
Merge SNPs for a chromosome
#102
apriha
closed
4 years ago
0
Adjust string formatting to use fstrings
#101
JulianRunnels
closed
4 years ago
0
Use f-strings for string formatting
#100
apriha
closed
4 years ago
0
Use temp dir for output files during tests
#99
apriha
closed
3 years ago
0
v2.0.1
#98
apriha
closed
4 years ago
1
Support alternate Mapmygenome header
#97
apriha
closed
4 years ago
1
v2.0.0
#96
apriha
closed
4 years ago
1
mapmygenome filter on GC.Score
#95
satishmp
opened
4 years ago
2
mapmygenome DTC file format has changed.
#94
satishmp
closed
4 years ago
0
Rename methods and properties
#93
apriha
closed
4 years ago
1
Rename `SNPs` methods and properties
#92
apriha
closed
4 years ago
0
Add `SNPs.merge` method
#91
apriha
closed
4 years ago
1
Fix usage of `check_exact`
#90
apriha
closed
4 years ago
1
Usage of `check_exact` raises `AssertionError`
#89
apriha
closed
4 years ago
0
Add `SNPs.merge` method
#88
apriha
closed
4 years ago
0
Handle diploid MT genotypes
#87
apriha
closed
4 years ago
1
Feature/sano updates
#86
willgdjones
closed
4 years ago
5
Use tab as default separator
#85
apriha
closed
4 years ago
1
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