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arnor-sigurdsson
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EIR
A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
https://eir.readthedocs.io/
GNU Affero General Public License v3.0
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Update models
#38
arnor-sigurdsson
closed
1 year ago
0
Add more data source options
#37
arnor-sigurdsson
closed
1 year ago
1
Add loading snp subsets
#36
arnor-sigurdsson
closed
2 years ago
1
Add gradient noise
#35
arnor-sigurdsson
closed
2 years ago
0
Update model setup
#34
arnor-sigurdsson
closed
2 years ago
1
Add prototype distributed support
#33
arnor-sigurdsson
closed
2 years ago
0
Update architectures
#32
arnor-sigurdsson
closed
2 years ago
0
Less strict model loading
#31
arnor-sigurdsson
closed
2 years ago
1
Bugfix dropped batched during validation
#30
arnor-sigurdsson
closed
2 years ago
0
Add optional FC layer to tabular model.
#29
arnor-sigurdsson
closed
2 years ago
0
Add gradient accumulation
#28
arnor-sigurdsson
closed
2 years ago
1
Bugfix l1 loss lookup
#27
arnor-sigurdsson
closed
2 years ago
0
Add gradient clipping
#26
arnor-sigurdsson
closed
2 years ago
0
Update docs
#25
arnor-sigurdsson
closed
2 years ago
0
Better pretraining support
#24
arnor-sigurdsson
closed
2 years ago
1
QOL and bugfixes
#23
arnor-sigurdsson
closed
2 years ago
1
Add pretrained checkpoint support
#22
arnor-sigurdsson
closed
2 years ago
0
Update models slightly
#21
arnor-sigurdsson
closed
2 years ago
1
Update configuration
#20
arnor-sigurdsson
closed
2 years ago
0
Add experiment io
#19
arnor-sigurdsson
closed
2 years ago
0
Add buffered metric writing
#18
arnor-sigurdsson
closed
2 years ago
0
Add image modality
#17
arnor-sigurdsson
closed
2 years ago
0
Add prototype functionality for modelling on raw bytes.
#16
arnor-sigurdsson
closed
2 years ago
0
Add support for missing tabular input samples
#15
arnor-sigurdsson
closed
2 years ago
1
Add local transformer option, support for external HF architectures and support for pretrained HF transformers
#14
arnor-sigurdsson
closed
2 years ago
0
Add support to reuse transformer weights across long sequences
#13
arnor-sigurdsson
closed
2 years ago
0
Add positional embedding for sequences
#12
arnor-sigurdsson
closed
2 years ago
0
Bugfix how L1 penalized weights
#11
arnor-sigurdsson
closed
2 years ago
0
Update figure save formats
#10
arnor-sigurdsson
closed
2 years ago
0
Add sequence modality
#9
arnor-sigurdsson
closed
2 years ago
0
Add tabular tutorial
#8
arnor-sigurdsson
closed
3 years ago
1
Add small fixes related to predicting on unknown samples.
#7
arnor-sigurdsson
closed
3 years ago
1
Update test configurations
#6
arnor-sigurdsson
closed
3 years ago
0
Revamp configuration
#5
arnor-sigurdsson
closed
3 years ago
0
Update random functions to rely more on PyTorch
#4
arnor-sigurdsson
closed
3 years ago
1
Bugfix tabular activation edge cases
#3
arnor-sigurdsson
closed
3 years ago
0
Add build
#2
arnor-sigurdsson
closed
3 years ago
0
Add basic docs.
#1
arnor-sigurdsson
closed
3 years ago
0
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