issues
search
arq5x
/
lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
MIT License
309
stars
118
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
tumor_normal.vcf filtering
#249
chunlinxiao
opened
6 years ago
6
SVTyper Best Practices for Lumpy Output
#248
andrewSharo
closed
6 years ago
2
Old link - SVtyper
#247
ATpoint
closed
6 years ago
1
Question on Evidence Weight
#246
egoetz
opened
6 years ago
0
Can we still call DEL, INV, INS separately as in version 1.0?
#245
yongfeng-zhou
opened
6 years ago
2
no lumpy filter installed
#244
Smediterranea
opened
6 years ago
1
Installation Error
#243
rlittman16
opened
6 years ago
1
update htslib in repo
#242
brentp
opened
6 years ago
0
The format of -g Genome file (defines chromosome order)
#241
yongfeng-zhou
opened
6 years ago
2
Lumpy inconsistently detecting SVs
#240
CBorreda
opened
6 years ago
1
low deletion sensitivity in length range 250-350bp
#239
lawremi
opened
6 years ago
1
may afford a mutation frequency for the fusion event
#238
liuyixiao
opened
6 years ago
2
exclude reads that are unmapped, not primary, failing-qc, duplicate
#237
brentp
closed
6 years ago
0
"core" file
#236
hjzhou988
opened
6 years ago
2
Insert size calculations differ between LUMPY Express and recommendations for calling LUMPY directly
#235
avakel
opened
6 years ago
0
support cram in lumpy filter
#234
brentp
closed
6 years ago
0
GT difference between 0/0 and ./.
#233
ytguojian
opened
6 years ago
4
comparation between l_merge.py and lumpy with mutiple samples
#232
ytguojian
closed
6 years ago
2
Can we use INFO SR PE for filtering?
#231
ytguojian
closed
6 years ago
4
Disabling pipefail when the output is explicitely troncated
#230
vdanjean
opened
6 years ago
1
samtools view: writing to standard output failed: Broken pipe
#229
pmonnahan
opened
6 years ago
8
l_merge.py problem
#228
ytguojian
closed
6 years ago
6
svtyper version
#227
jjfarrell
opened
6 years ago
0
Limiting calls to chr1-chr22,X,Y in GRCh38
#226
jjfarrell
closed
6 years ago
2
LUMPY Error
#225
pinninti1991
opened
6 years ago
4
LUMPY result with all FILTER fields='.'
#224
GangLiTarheel
opened
6 years ago
1
Lumpy Installation Error
#223
pinninti1991
opened
6 years ago
2
Low Frequency Somatic Variant Filtering
#222
mej54
opened
6 years ago
2
Out of Memory
#221
klucek
opened
6 years ago
3
What is different between script "extractSplitReads_BwaMem" and split reads output of samblast
#220
yipukangda
closed
6 years ago
4
Bedpe Output
#219
mej54
closed
6 years ago
2
Lumpy run successfully but returned no results (What does Lumpy needs in terms of @RG)
#218
HHHit
opened
6 years ago
1
An big inversion reported as BND (lumpyexpress)
#217
MehmetGoktay
opened
6 years ago
2
Guideline for Somatic variants
#216
ATpoint
opened
6 years ago
3
Arguments too long for lumpy
#215
GangLiTarheel
opened
6 years ago
3
Separating SR evidence based on strand orientation
#214
mej54
opened
6 years ago
4
Splitted bam files
#213
woodoo46
closed
6 years ago
1
samblaster
#212
woodoo46
closed
6 years ago
3
No chromosomes defined in VCF header / sorting VCF output
#211
colindaven
closed
6 years ago
2
Pre-processing Questions
#210
mej54
closed
6 years ago
1
Lumpy freezes, stops writing to output, no error
#209
StevenMicheletti
closed
6 years ago
1
Quote spaces in names
#208
ernfrid
opened
7 years ago
0
Related documentation about "Run LUMPY Express on a tumor-normal pair"
#207
AlicePsyche
closed
6 years ago
6
add link to recommend exclude file(s)
#206
brentp
closed
7 years ago
1
Error happened running the l_merge.py
#205
54tuifeimo
closed
7 years ago
2
lumpy & lumpyexpress configs don't allow a prefix
#204
slash5toaster
opened
7 years ago
1
No (or buried) documentation on the number in the STRANDS field?
#203
hepcat72
opened
7 years ago
1
How to do the next steps when get the VCF file of each sample
#202
54tuifeimo
opened
7 years ago
5
SIGPIPE handling in lumpyexpress
#201
apregier
opened
7 years ago
3
Lumpyexpress output
#200
54tuifeimo
closed
7 years ago
1
Previous
Next