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arq5x
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lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
MIT License
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Some error raised and some questions
#299
codeunsolved
closed
5 years ago
2
Minimap2 and Lumpy
#298
rvaldes
opened
5 years ago
1
Does lumpy double count the support at a particular location?
#297
MarkDunne
opened
5 years ago
2
No error in make, no error running, no temp and no vcf output
#296
bmlett
opened
5 years ago
0
lumpy-sv compilation error
#295
SarahRQazi
opened
5 years ago
2
Is the last stable release from Lumpy from 2016?
#294
evanbiederstedt
closed
5 years ago
2
Will min_non_overlap influence sensitivity of lumpy?
#293
xyw1
opened
5 years ago
0
lumpy_filter :: undefined exit value
#292
EricDeveaud
opened
5 years ago
0
Handling multisample in Lumpy (traditional use)
#291
SuhanC
opened
5 years ago
0
link to smoove
#290
brentp
closed
5 years ago
0
lumpy_filter missing / never built
#289
jbsysadmin
opened
5 years ago
2
Excessive run time?
#288
gwct
opened
5 years ago
5
Question of `min_non_overlap` option meaning
#287
Yiming-Shen
opened
5 years ago
1
lumpy running error
#286
shannjiang
opened
5 years ago
0
configure: error: Cannot find some needed GSL include files
#285
cyanb007
opened
5 years ago
2
count total number of aligned reads inside of lumpy_filter
#284
brentp
closed
5 years ago
1
Processing multiple samples
#283
Jordi-V
opened
5 years ago
11
lumpy_filter: report total number of alignments
#282
brentp
closed
5 years ago
1
Pairend_distro.py warning: only x elements
#281
Fabou13
opened
5 years ago
6
How does lumpy handle soft-clipped bases in bam file?
#280
xyw1
opened
5 years ago
4
Only include paired-end sequencing reads in discordants file
#279
ernfrid
closed
5 years ago
3
no result with multiple libraries
#278
asylvz
opened
5 years ago
2
Work-around for lumpy segfaults from lumpyexpress
#277
hepcat72
opened
5 years ago
3
lumpy segfault in lumpyexpress & work around
#276
hepcat72
opened
5 years ago
1
Latest version of Lumpy (2018)
#275
ahwanpandey
closed
5 years ago
1
there is no SR support
#274
arkyl
opened
5 years ago
8
Change inline functions to static inline
#273
ernfrid
closed
5 years ago
0
match behavior of extract_sv_reads and samblaster
#272
brentp
closed
5 years ago
0
Changes to get NM in output BAM.
#271
ernfrid
closed
5 years ago
3
DUP and DUP:TANDEM
#270
arkyl
opened
5 years ago
2
use some cram decode stuff to reduce run-time of lumpy_filter for cram
#269
brentp
closed
5 years ago
2
Question about filtering germline or somatic SV?
#268
lss1227
closed
5 years ago
2
lumpyexpress on tumor/normal pair
#267
arkyl
opened
5 years ago
4
Qusetion about count
#266
panzhaodong123
closed
5 years ago
1
how to install lumpy-sv within a Makefile
#265
arkyl
opened
5 years ago
0
All INV have "++" as the strands in the output of vcfToBedpe
#264
weishwu
opened
6 years ago
2
pe+sr question
#263
LEE1214
opened
6 years ago
3
Running svtyper on Lumpyexpress vcf file
#262
btoe
opened
6 years ago
2
No split read support found
#261
thelingxichen
opened
6 years ago
3
lumpyexpress bedpe parameter
#260
fpbarthel
opened
6 years ago
2
lumpyexpress segmentation fault on b37 aligned tumor-normal pairs
#259
fpbarthel
closed
6 years ago
3
Questions about DP and AF
#258
zhliUU
opened
6 years ago
10
how to filter and svtyper a normal tumor pair
#257
thelingxichen
opened
6 years ago
5
Lumpy Express Issue
#256
ramayyala
opened
6 years ago
10
SV truth set
#255
arkyl
opened
6 years ago
2
Missing ID for evidence of PE reads.
#254
zhliUU
closed
6 years ago
3
Filter VCF Prior to Running SVTyper
#253
andrewSharo
closed
6 years ago
18
lumpyexpress finishes without result
#252
arkyl
opened
6 years ago
12
Multiple calls in same region
#251
renzobalb
closed
6 years ago
2
Error for Partial BAM
#250
sicotte
closed
6 years ago
2
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