artic-network rampart issues

artic-network / rampart

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

GNU General Public License v3.0

79 stars 33 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Show coverage % in barchart at top

#67 rambaut opened 4 years ago
0
Front end memory issues when reaching millions of reads.

#66 rambaut closed 4 years ago
1
No data showing when using remote browser

#65 Psy-Fer closed 4 years ago
3
Support for fastq.gz

#64 mattdmem closed 4 years ago
2
RAMPART & MinKNOW Barcoding

#63 mattdmem closed 4 years ago
2
Reference heatmap needs improvement with light theme

#62 jameshadfield opened 4 years ago
0
Allow FASTQs to be in subfolders

#61 jameshadfield closed 4 years ago
1
Export reads Error

#60 zhuying412 closed 4 years ago
2
Remote browser fix

#59 iiSeymour closed 4 years ago
0
Update installation.md

#58 rmp closed 4 years ago
1
Update installation.md

#57 rmp closed 4 years ago
0
Keep the reference colours consistent between runs and/or have some control over reference colour.

#56 aineniamh opened 4 years ago
6
Improve documentation of config args to post processing scripts

#55 aineniamh opened 4 years ago
2
Panel in UI to show currently running processing scripts

#54 rambaut opened 4 years ago
2
Implement read filtering

#53 jameshadfield closed 4 years ago
0
Reinstate UI for barcode-sample mapping/labelling.

#52 rambaut closed 4 years ago
0
Filters panel for UI

#51 rambaut closed 4 years ago
0
Amplicon caller in annotation script

#50 rambaut opened 4 years ago
0
Responsive design for iPads/Phones/MinION Mk1C etc touchscreen

#49 rambaut opened 4 years ago
0
Jump to sample if you click on a sample name

#48 rambaut opened 4 years ago
1
Generate reports as PDF or similar

#47 rambaut opened 4 years ago
0
Don't show coverage by reference if only one reference

#46 rambaut opened 4 years ago
0
Implemented the ability of parse_paf.py to cope with multiple mapping…

#45 rambaut closed 5 years ago
0
Resizing or zooming page using cmd – +/- doesn't resize components

#44 rambaut closed 5 years ago
0
Optional reading of .bed files

#43 rambaut opened 5 years ago
0
Command line/config option to specify number of references shown

#42 rambaut closed 4 years ago
1
If barcodeNames are specified then show the sample even if no reads are mapped

#41 rambaut closed 4 years ago
1
Wrapping of sample names

#40 rambaut closed 5 years ago
0
Artifactual peak in read length histogram

#39 rambaut opened 5 years ago
1
Heatmap colour scale reversed.

#38 rambaut closed 5 years ago
0
Option to show absolute number of reference matches in heatmap

#37 rambaut closed 5 years ago
0
When a set of barcode names are specified, only those should be shown

#36 rambaut closed 5 years ago
0
Dynamic inclusion of references in the reference heatmap chart

#35 rambaut closed 5 years ago
1
Include an 'unmapped' row in the reference mapping heatmap chart

#34 rambaut closed 5 years ago
0
Dynamically pick colour range for different samples

#33 rambaut closed 5 years ago
2
Visualise genetic distance from reference

#32 rambaut closed 4 years ago
5
Bin reads from sample including any filters.

#31 rambaut closed 5 years ago
4
Add filters on to reads by clicking on UI components.

#30 rambaut opened 5 years ago
0
More colours needed

#29 rambaut closed 5 years ago
1
Add modularity

#28 rambaut opened 5 years ago
0
Dig-down display into each channel

#27 rambaut closed 5 years ago
1
Create a double clickable start button

#26 rambaut opened 5 years ago
0
Create sample setup front end.

#25 rambaut closed 5 years ago
2
Adapt RAMPART's demuxing to use qcat.

#24 rambaut closed 5 years ago
3
denominator of the coverage (for the coverage through time plots) be the total spanned by the amplicons (defined by the primers) rather than to whole genome

#23 jameshadfield closed 5 years ago
0
🇬🇭

#22 jameshadfield closed 5 years ago
0
Paths in config file should be relative to config file

#21 rambaut closed 5 years ago
1
Axis with log option toggle by clicking

#20 rambaut closed 5 years ago
1
Coverage plots with log axes

#19 rambaut closed 5 years ago
1
Daemon process should be able to resume

#18 rambaut closed 5 years ago
1

Previous Next