arvestad jprime issues - Githubissues

arvestad / jprime

Probabilistic Inference of Molecular Evolution

Other

8 stars 10 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Insufficient no. of discretization points

#31 omwa227 opened 1 year ago
4
Bump logback-classic from 0.9.29 to 1.2.0

#30 dependabot[bot] closed 3 years ago
0
Couldn't reading the example fasta correctly

#29 yongzhiyang2012 closed 5 years ago
1
Deleterious changes between 0.3.5c and 0.3.6

#28 BenoitMorel opened 5 years ago
0
Host tree parsing problems

#27 ryneches closed 6 years ago
4
on failure, don't emit successful exit status

#26 ryneches opened 6 years ago
1
Delirious fails to use substitution models other than default (using the jar from the dropbox)

#25 Gullumluvl opened 6 years ago
1
This closes #23 and #21

#24 gpihl closed 7 years ago
0
Safe exit when killed

#23 arvestad closed 7 years ago
0
GenPhyloData does not count lost genes in pruned trees

#22 arvestad opened 7 years ago
0
GenPhyloData yields incorrect leaf maps

#21 arvestad closed 7 years ago
0
Bug fixes and add new substitution models

#20 gpihl closed 7 years ago
0
Apps listed several times in List of available applications

#19 gpihl closed 7 years ago
0
Changed occurences of code.google to github and added references to article

#18 gpihl closed 7 years ago
0
Bug fixes Closes #7

#17 gpihl closed 7 years ago
0
Refactor code and fix maven dependencies

#16 gpihl closed 7 years ago
0
Fix output format of host tree

#15 arvestad closed 7 years ago
1
Reduce precision in number output

#14 arvestad opened 7 years ago
0
Add references

#13 arvestad opened 7 years ago
0
jprime build issues

#12 gtiley closed 8 years ago
3
Default proposal weights

#11 arvestad opened 9 years ago
0
JPrIME documentation is not fully imported

#10 arvestad closed 7 years ago
1
problem reading trees of my own

#9 GoogleCodeExporter opened 9 years ago
0
Patch for /trunk/jprime/src/main/java/se/cbb/jprime/apps/dltrs/Deleterious.java

#8 GoogleCodeExporter closed 7 years ago
0
App names: DLRS, DLTRS, etc

#7 GoogleCodeExporter closed 7 years ago
0
Feature request: option "--bibtex"

#6 GoogleCodeExporter opened 9 years ago
1
jprime cannot parse Newick comments

#5 GoogleCodeExporter closed 9 years ago
1
Division by zero on large trees

#4 GoogleCodeExporter opened 9 years ago
2
Cannot handle unrooted input trees

#3 GoogleCodeExporter opened 9 years ago
0
Failed to produce valid pruned tree within max allowed attempts

#2 GoogleCodeExporter closed 9 years ago
3
jprime bugs out on extraneous space in the accession line

#1 GoogleCodeExporter closed 7 years ago
1