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arvestad
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jprime
Probabilistic Inference of Molecular Evolution
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Insufficient no. of discretization points
#31
omwa227
opened
1 year ago
4
Bump logback-classic from 0.9.29 to 1.2.0
#30
dependabot[bot]
closed
3 years ago
0
Couldn't reading the example fasta correctly
#29
yongzhiyang2012
closed
5 years ago
1
Deleterious changes between 0.3.5c and 0.3.6
#28
BenoitMorel
opened
5 years ago
0
Host tree parsing problems
#27
ryneches
closed
6 years ago
4
on failure, don't emit successful exit status
#26
ryneches
opened
6 years ago
1
Delirious fails to use substitution models other than default (using the jar from the dropbox)
#25
Gullumluvl
opened
6 years ago
1
This closes #23 and #21
#24
gpihl
closed
7 years ago
0
Safe exit when killed
#23
arvestad
closed
7 years ago
0
GenPhyloData does not count lost genes in pruned trees
#22
arvestad
opened
7 years ago
0
GenPhyloData yields incorrect leaf maps
#21
arvestad
closed
7 years ago
0
Bug fixes and add new substitution models
#20
gpihl
closed
7 years ago
0
Apps listed several times in List of available applications
#19
gpihl
closed
7 years ago
0
Changed occurences of code.google to github and added references to article
#18
gpihl
closed
7 years ago
0
Bug fixes Closes #7
#17
gpihl
closed
7 years ago
0
Refactor code and fix maven dependencies
#16
gpihl
closed
7 years ago
0
Fix output format of host tree
#15
arvestad
closed
7 years ago
1
Reduce precision in number output
#14
arvestad
opened
7 years ago
0
Add references
#13
arvestad
opened
7 years ago
0
jprime build issues
#12
gtiley
closed
8 years ago
3
Default proposal weights
#11
arvestad
opened
9 years ago
0
JPrIME documentation is not fully imported
#10
arvestad
closed
7 years ago
1
problem reading trees of my own
#9
GoogleCodeExporter
opened
9 years ago
0
Patch for /trunk/jprime/src/main/java/se/cbb/jprime/apps/dltrs/Deleterious.java
#8
GoogleCodeExporter
closed
7 years ago
0
App names: DLRS, DLTRS, etc
#7
GoogleCodeExporter
closed
7 years ago
0
Feature request: option "--bibtex"
#6
GoogleCodeExporter
opened
9 years ago
1
jprime cannot parse Newick comments
#5
GoogleCodeExporter
closed
9 years ago
1
Division by zero on large trees
#4
GoogleCodeExporter
opened
9 years ago
2
Cannot handle unrooted input trees
#3
GoogleCodeExporter
opened
9 years ago
0
Failed to produce valid pruned tree within max allowed attempts
#2
GoogleCodeExporter
closed
9 years ago
3
jprime bugs out on extraneous space in the accession line
#1
GoogleCodeExporter
closed
7 years ago
1