run_tSNE fails on big datasets

asmagen / robustSingleCell

Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.

http://dx.doi.org/10.1016/j.celrep.2019.10.131

MIT License

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run_tSNE fails on big datasets #13

Closed asmagen closed 5 years ago

asmagen commented 5 years ago

sopt <- list(mem = "4GB", time = "0:15:00", share = TRUE) is hard coded, should be allowed to be provided as input to summarize function.

Mamie commented 5 years ago

Added the memory and time limit option to run_tSNE.

asmagen commented 5 years ago

run_tSNE has memory and wall time parameters but is called from summarize which doesn't pass these parameters (and run_tSNE is not exported, which is okay).

Mamie commented 5 years ago

Added the mem and time option to summarize().