Installation instructions in the README are wrong

atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

MIT License

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Installation instructions in the README are wrong #111

Closed pnewstein closed 1 year ago

pnewstein commented 1 year ago

The readme recommends the installation of many dependencies through conda, then the final installation with pip.

However, the versions pinned in the setup.py are incompatable with the pinned versions in the conda command. For example, numpy 1.23.5 requires python>=3.9.

The following command worked for me:

conda create -n SAMap -c conda-forge python=3.9 numpy=1.23.5 pip pybind11 h5py=3.8.0 leidenalg python-igraph texttable

atarashansky commented 1 year ago

Hi, thanks for pointing this out. I recently pinned the versions in setup.py and forgot to update the readme. Updating now!