Multi-species cell type network plot

atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

MIT License

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Multi-species cell type network plot #119

Open dnjst opened 1 year ago

dnjst commented 1 year ago

Hi,

SAMap is great!

I was wondering if there is a function, or code / short walkthrough you have shared somewhere or could share, to generate a plot like Figure 5C in the Tarashansky et al. 2021 paper?

https://elifesciences.org/articles/66747/figures#fig5

The sankey/chord plots are great for two-species, but in studies with 3+, SAMap, something like the Figure 5C nodes seems to be necessary

dariotommasini commented 7 months ago

Did you see the methods section "Visualization"? It has some details like, "The network graphs in Figure 5C are generated using the networkx package (https://networkx. github.io) in python."