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atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
MIT License
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Cross-species UMAP scatter plots #122

Closed zhongzheng1999 closed 2 months ago

zhongzheng1999 commented 10 months ago

Hi, I hope this message finds you well. I would like to inquire about a question related to the SAMap algorithm. I have successfully used the SAM algorithm to generate a highly satisfactory UMAP plot on human data. However, I am now interested in comparing data across different species and would like to obtain a UMAP plot whose spatial distribution closely matches that of the human UMAP plot. I am looking to achieve a similar outcome to what Seurat's MapQuery function provides, rather than creating an entirely new UMAP plot that includes both human and mouse cells. Do you have any suggestions or recommendations to help me achieve this goal?

zhongzheng1999 commented 10 months ago

I hope get something similar to the image below. image