sankey_plot error

[zEpoch]

Unexpected option 'depth_map' for Sankey type across all extensions. Similar options for current extension ('bokeh') are: ['node_cmap']

[atarashansky]

Can you paste the output of pip list here?

[zEpoch]

`$ pip list Package Version

---

anndata 0.9.2 ansiwrap 0.8.4 anyio 3.6.2 argon2-cffi 21.3.0 argon2-cffi-bindings 21.2.0 asttokens 2.1.0 attrs 22.1.0 Babel 2.11.0 backcall 0.2.0 backports.functools-lru-cache 1.6.4 beautifulsoup4 4.11.1 bleach 5.0.1 bokeh 3.1.1 brotlipy 0.7.0 certifi 2023.7.22 cffi 1.15.1 charset-normalizer 2.1.1 click 8.1.3 colorama 0.4.6 colorcet 3.0.1 comm 0.1.0 conda 22.9.0 conda-package-handling 1.9.0 contourpy 1.0.6 cryptography 38.0.3 cycler 0.11.0 debugpy 1.6.3 decorator 5.1.1 defusedxml 0.7.1 dill 0.3.7 entrypoints 0.4 executing 1.2.0 fast-histogram 0.12 fastjsonschema 2.16.2 flit_core 3.8.0 fonttools 4.38.0 h5py 3.8.0 harmonypy 0.0.9 hnswlib 0.7.0 holoviews 1.17.1 holoviews-samap 2.0.0 idna 3.4 igraph 0.10.8 importlib-metadata 5.0.0 importlib-resources 5.10.0 ipykernel 6.18.0 ipympl 0.9.2 ipython 8.6.0 ipython-genutils 0.2.0 ipywidgets 8.0.2 jedi 0.18.2 Jinja2 3.1.2 joblib 1.3.2 json5 0.9.10 jsonschema 4.17.1 jupyter_client 7.4.7 jupyter-contrib-core 0.4.2 jupyter-contrib-nbextensions 0.7.0 jupyter_core 5.0.0 jupyter-highlight-selected-word 0.2.0 jupyter-lsp 1.5.1 jupyter-nbextensions-configurator 0.6.1 jupyter-resource-usage 0.6.4 jupyter-server 1.23.3 jupyterlab 3.5.0 jupyterlab-execute-time 2.3.0 jupyterlab-lsp 3.10.2 jupyterlab-pygments 0.2.2 jupyterlab_server 2.16.3 jupyterlab-topbar 0.6.1 jupyterlab-widgets 3.0.3 kiwisolver 1.4.4 leidenalg 0.10.1 linkify-it-py 2.0.2 llvmlite 0.39.1 lxml 4.9.1 Markdown 3.5.1 markdown-it-py 3.0.0 MarkupSafe 2.1.1 matplotlib 3.6.2 matplotlib-inline 0.1.6 mdit-py-plugins 0.4.0 mdurl 0.1.2 mistune 2.0.4 munkres 1.1.4 natsort 8.4.0 nbclassic 0.4.8 nbclient 0.7.0 nbconvert 7.2.5 nbformat 5.7.0 nbresuse 0.4.0 nest-asyncio 1.5.6 networkx 3.1 notebook 6.5.2 notebook_shim 0.2.2 numba 0.56.3 numpy 1.23.5 packaging 21.3 pandas 1.5.1 pandocfilters 1.5.0 panel 1.2.3 papermill 2.4.0 param 1.13.0 parso 0.8.3 patsy 0.5.3 pexpect 4.8.0 pickleshare 0.7.5 Pillow 9.2.0 pip 22.3.1 pkgutil_resolve_name 1.3.10 platformdirs 2.5.4 ply 3.11 prometheus-client 0.15.0 prompt-toolkit 3.0.33 psutil 5.9.4 ptyprocess 0.7.0 pure-eval 0.2.2 pycosat 0.6.4 pycparser 2.21 pyct 0.5.0 Pygments 2.13.0 pynndescent 0.5.10 pyOpenSSL 22.1.0 pyparsing 3.0.9 PyQt5 5.15.7 PyQt5-sip 12.11.0 pyrsistent 0.19.2 PySocks 1.7.1 python-dateutil 2.8.2 pytz 2022.6 pyviz_comms 3.0.0 PyYAML 6.0 pyzmq 24.0.1 requests 2.28.1 ruamel-yaml-conda 0.15.80 sam-algorithm 1.0.2 samap 1.0.15 scanpy 1.9.3 scikit-learn 1.3.2 scipy 1.10.1 seaborn 0.13.0 Send2Trash 1.8.0 session-info 1.0.0 setuptools 65.6.0 sip 6.7.5 six 1.16.0 sniffio 1.3.0 soupsieve 2.3.2.post1 stack-data 0.6.1 statsmodels 0.14.0 stdlib-list 0.9.0 tbb 2021.10.0 tenacity 8.1.0 terminado 0.17.0 texttable 1.7.0 textwrap3 0.9.2 threadpoolctl 3.2.0 tinycss2 1.2.1 toml 0.10.2 tomli 2.0.1 toolz 0.12.0 tornado 6.2 tqdm 4.64.1 traitlets 5.5.0 typing_extensions 4.4.0 uc-micro-py 1.0.2 umap-learn 0.5.4 unicodedata2 15.0.0 urllib3 1.26.12 wcwidth 0.2.5 webencodings 0.5.1 websocket-client 1.4.2 wheel 0.38.4 widgetsnbextension 4.0.3 xeus-python-shell 0.5.0 xyzservices 2023.10.1 zipp 3.10.0`

[atarashansky]

Can you pip uninstall holoviews and try again?

[zEpoch]

i have tried several times, depth_map have been changged into node_camp, that works

[zEpoch]

and i have pulled a request, which could be helpful