Reproducibility and seeding

atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

MIT License

63 stars 19 forks source link

Reproducibility and seeding #135

Open dariotommasini opened 7 months ago

dariotommasini commented 7 months ago

Hi @atarashansky,

Thank you for this great tool! I noticed that there is a degree of randomness to the sm.run function. I get slightly different values for the correlation homology graph scores from sm.query_gene_pairs and the alignment scores from each iteration vary slightly. Can we supply a seed to make the output consistent?

Thanks! Dario

dariotommasini commented 3 months ago

Hi @atarashansky. I hope you're doing well. I'm reopening this because I think it's still relevant.