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atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
MIT License
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Best course of action when one has multiple datasets per species #143

Closed matejasoretic closed 4 months ago

matejasoretic commented 4 months ago

What would be the best course of action to apply if one has multiple independent datasets for one of the species in the analysis. What I mean is: E.g. if one has collected several different datasets from the same species (e.g. if one downloads several different human datasets, generated with different sequencing methods) that should be integrated with data from other species; Should one just concatenate all the h5ad objects from this species into one h5ad object, and then feed this into SAMAP() Or should one also consider each human dataset independently in this case?

matejasoretic commented 4 months ago

https://github.com/atarashansky/SAMap/issues/131 Found that the issue was already addressed, closing