We are using SAMap to compare Drosophila and Anopheles data. So far we are happy with the analyses but we struggle to smartly extract the pairs data to Seurat. Do you have any recommendations that could be useful? From which object by exemple?
We thought we could extract for each cell a similarity score with the same cell mapped to another species?
Hi @atarashansky,
We are using SAMap to compare Drosophila and Anopheles data. So far we are happy with the analyses but we struggle to smartly extract the pairs data to Seurat. Do you have any recommendations that could be useful? From which object by exemple?
We thought we could extract for each cell a similarity score with the same cell mapped to another species?
Thanks for this great package and your help,
SiP