I think the tutorial in Jupyter notebook is unclear that it took me a while to realize how to preprocess my raw .h5ad to a SAM object...And I actually found my answer in issue #66 .
It was clear that "When loading in raw data, SAMap will automatically process them with SAM and save the results to an *_pr.h5ad file." However, the information of how to "loading in raw data" is missing.
I think the tutorial in Jupyter notebook is unclear that it took me a while to realize how to preprocess my raw .h5ad to a SAM object...And I actually found my answer in issue #66 .
It was clear that "When loading in raw data, SAMap will automatically process them with SAM and save the results to an *_pr.h5ad file." However, the information of how to "loading in raw data" is missing.