after the 'sm.run(pairwise=True)', how to save the results of sm to our disk？

atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

MIT License

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Closed wubaosheng closed 2 years ago

wubaosheng commented 2 years ago

after the 'sm.run(pairwise=True)', how to save the results of sm to our disk？ @atarashansky

1646528644(1)

wubaosheng commented 2 years ago

samap.utils.save_samap(sm,'test.sam')

atarashansky commented 2 years ago

it should be

samap.utils.save_samap(sm,'test')

if that doesnt work please save the anndata output by samap: sm.samap.adata.